BAC Information

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BAC

Clone NameMSMg01-503J10
Chromosome5 (Build37)
Map Location 31,976,003 - 31,976,244
singlet/doubletsinglet
Overlap geneRbks
Upstream geneCenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, LOC100040000
Downstream geneBre, Fosl2, LOC672217, Plb1, EG665350, LOC545743, Ppp1cb, LOC634553, LOC675983, Yes1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503J10.T7 (MSMg01no503_j10.b1)MSMg01-503J10.TJ (MSMg01no503_j10.g1)
ACCAG578670AG578671
length727693
length of high quality
(start - end)
504 (89 - 592)242 (58 - 299)
definitionCHROMAT_FILE: MSMg01no503_j10.b1 PHD_FILE: MSMg01no503_j10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:55 2005CHROMAT_FILE: MSMg01no503_j10.g1 PHD_FILE: MSMg01no503_j10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCCTTTTTTCTCTCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTT
TCTAGGATCCGCGGAATTCCACAATATTTCCTCACTGATAAGTGGATATT
AGCCCAGAAACTTAGAATACCCAAGATATAAGATACAATTTGCTAAACGA
ATGAAACTCAAGAAGAACGAAGACCAAAGTGTGGACACTTTGCCCCTTCT
TAGAATTGGGAACAAAACACCCATGGAAGGAGTTACAGAGACACAGTTTG
GAGCTGAGACGAAAGGATGGACCATCTAGAGACTGCCATATCTGGGGATC
CATCCCATAATCAACCTCCAAATGCTTATACCATTGCATACACTAGCAAG
ATTTTGCTGAAAGGATCCAGATGTAGCTGTCTCTTGTGAGACTATGCCGG
GGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTATTGGATGGATC
ACAGGGCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGG
TCTGCAACCCTATAGGTGGAACAACAATATGAACTAACCAGTATTCCCGG
AGCTCATGTCTCTAGCTGCATATGAATCAGAAGATGGCCTAGTTGGTCAT
CAGTGGAAAGAGAGGCCCATTGGTCATGCAAACTTTATATGCCTCAGTAC
AGGGGAACGCCAGGGCCAACAACAGTTAGTGGGTGTGTTGGGCGTATCGG
TTTTTTTTTTTCCCCCCCTCCCTCCCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCTCTCCTCTCCAGTTGCTGTAGCTGCACTACAAATGACAGCTG
GTGTCTGTACTGCATTGGGGCTATTCACAGGATAGTCCCCTGGCCCACAG
CAGAGCTTTACTTACACTGGAACTCAGCAGGCAGGCTGAAGGAAAGGGTA
TGGGATTCTCTGTCAGTTTCAGAAGAAGCAGGATGTTTATCATGATTCTA
GTGAGTATCAAGTGTGGGACTTGAAGAGGAGAGGGAAGCAGGGATTTCTG
GTTCTAAAAGAACCCTTTTTGTTTCCTTGAGGGTGGGGCAGGAGCAGACT
CTGTCCTGAATACTGTGTCATTTATGCATGATGTCCAAAGGAACATCTAT
TTAAAATGATGGAGCGCTAAGTACTAAGTTTGGGCTTAAGTTTCATTACG
GAGCATCACAATCATATAAAAGTATATCTCCCTGTCCTGTCCACTCAGCA
CTTAGACTCAGTTATCAACTCTCAGCTCATCTTGCCCCCATTTCCATTGG
TGTCATGAGAGGCTAAGCACGACTTCACCATAATGCTATGGCCAACGGCG
ACAGTATTATTCATGGGAAGCATTACATGAGATTTGTTCTAGGTAAAAGC
TTTCCTGACTTTAATATACCCGATTTGAAGACACCAGATTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_j10.g1 MSMg01no503_j10.g1 CHROMAT_FILE:
MSMg01no503_j10.g1 PHD_FILE: MSMg01no503_j10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:55 2005
         (242 letters)



>mm_chr5_31975803_31976444
          Length = 642

 Score =  460 bits (238), Expect = e-134
 Identities = 241/242 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctcctctccagttgctgtagctgcactacaaatgacagctggtgtctgtactgcattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctctcctctccagttgctgtagctgcactacaaatgacagctggtgtctgtactgcattg 260

                                                                       
Query: 61  gggctattcacaggatagtcccctggcccacagcagagctttacttacactggaactcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggctattcacaggatagtcccctggcccacagcagagctttacttacactggaactcag 320

                                                                       
Query: 121 caggcaggctgaaggaaagggtatgggattctctgtcagtttcagaagaagcaggatgtt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 caggcaggctgaaggaaagggtatgggattctctgtcagtttcagaagaagcaggaggtt 380

                                                                       
Query: 181 tatcatgattctagtgagtatcaagtgtgggacttgaagaggagagggaagcagggattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatcatgattctagtgagtatcaagtgtgggacttgaagaggagagggaagcagggattt 440

             
Query: 241 ct 242
           ||
Sbjct: 441 ct 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)