BAC Information

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BAC

Clone NameMSMg01-503J22
Chromosome5 (Build37)
Map Location 133,241,984 - 133,242,309
singlet/doubletsinglet
Overlap genenone
Upstream geneAuts2, 4930563F08Rik
Downstream geneLOC100039731
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503J22.T7 (MSMg01no503_j22.b1)MSMg01-503J22.TJ (MSMg01no503_j22.g1)
ACCAG578694AG578695
length708680
length of high quality
(start - end)
518 (69 - 586)370 (72 - 441)
definitionCHROMAT_FILE: MSMg01no503_j22.b1 PHD_FILE: MSMg01no503_j22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:57 2005CHROMAT_FILE: MSMg01no503_j22.g1 PHD_FILE: MSMg01no503_j22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCTTTTTTTTNTTTCATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXTT
TCGAGGATCCGCGNGATTCAATAGGGAGTACTAGAACACTTGCCTAGAAT
CCTACAGAGAGGGGCTGAGGGCATGGCTCAGTGGTAGAGCCCCTGCCTAG
AATCCCCCAGGGAGGAGCTGGGGGCGTGGCTCAGTGGTAGAGCCCCTGCC
TAGAATCTCCCAGGGAGGAGCTGGGGGCGTGGCTCAGTGGTAGAGCCCTT
GCATAGAGTCCTCCAATGAGGGGCTGGGGGCGTGGCTCAGTGGTAGAGCA
TCTGCCTAGAATCCCCCAGTGAGGGGGCTGGGAGAGTGGCTCAGTGGTAG
AGCTCCTGCCTAGAATCCCTCAGTGAGAGGGCTGGGCTATGGCTCAGTGG
TAGAGCTCTTCTTTAGCAGGTGAAAGACCCTAGGGTCAATCTTTAGTACT
GGGGAGGGGCAAGGGAGCCTGGAACTAGAGCTAGGATTGGCCTTTTCTGG
GATGACAGCCAGATGGAGAGCTGAGTATCTGCTAATTACCCTGAAATGGG
GCCATTAAATGCCCTCCCCTATTTCACAGCATAACCACAACAGTCAAATG
AGGTCAAGTTTACAGAAATGTCTTATAAGGACATGAGCTGCCTCTCTGTT
GAATACAGCCTTGCTTAGATGGGATGCAGGAGTGTCCAAAGGGATGTTTC
AGGGATGN
CATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTGGCGTTCCTGCCTCTACCCATCAAGAC
CTGGGATTACTGGATTTCAGGCGGGTCTGTGCACTACACTTGGCTTTACT
GCTTACAATTGTCTGAATGAGAAACGTCCCCTGTGGGTTAGGGTATTTGA
ACACTTGACCCCCACCCCAGATGGTGGCATTGTTTGGAAGGTTTGGGAGA
TGTAGCCTTGCTGGGGAAAATATGTCACTGGAGGTGGGCTTGGAGATTTT
ATAGCCCTGAGGCCACTTTTAATTTACTTTCTCTGCTTTGTGCTGGTAAT
CTGAAGATGAAAGCTCTCAGTTTCTTGCCCCTGTTGCTGTGACATGTCTG
CCATTTGCCACCATGTCTTTTTTTTAATTAATTAATTAGTTAATTAATTA
CTTTTTATTAGATATTTTCTTCATTTACATTTTTAAAAGGGCTTTTCCCC
CGAAGAAGAGCCCCCCCCCCGCGTTGTGGTGTTTTTTGTCCTCCCTCTCT
TTGCCCCTCCCCCCACCCTCTTTTTTTTATTTTTTNNNNTNCGTTTTTCC
TCCCCCTCTCCCCCCAGTTCTTTTTTTTTTTATTTTTTTATACATTACTT
CCCTCCTCCCCCACGTNNNGTNNNNNNNNG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_j22.b1 MSMg01no503_j22.b1 CHROMAT_FILE:
MSMg01no503_j22.b1 PHD_FILE: MSMg01no503_j22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:57 2005
         (518 letters)



>mm_chr5_133241392_133242309
          Length = 918

 Score =  623 bits (322), Expect = 0.0
 Identities = 325/326 (99%)
 Strand = Plus / Minus

                                                                       
Query: 193 ctccaatgaggggctgggggcgtggctcagtggtagagcatctgcctagaatcccccagt 252
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918 ctccaatgaggggctgggggcgtggctcagtggtagagcatctgcctagaatcccccagt 859

                                                                       
Query: 253 gagggggctgggagagtggctcagtggtagagctcctgcctagaatccctcagtgagagg 312
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 gagggggctgggagagtggctcagtggtagagctcctgcctagaatccctcagtgagagg 799

                                                                       
Query: 313 gctgggctatggctcagtggtagagctcttctttagcaggtgaaagaccctagggtcaat 372
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 gctgggctatggctcagtggtagagctcttctttagcaggtgaaagaccctagggtcaat 739

                                                                       
Query: 373 ctttagtactggggaggggcaagggagcctggaactagagctaggattggccttttctgg 432
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ctttagtactggggaggggcaagggagcctggaactagagctaggattggccttttctgg 679

                                                                       
Query: 433 gatgacagccagatggagagctgagtatctgctaattaccctgaaatggggccattaaat 492
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gatgacagccagatggagagctgagtatctgctaattaccctgaaatggggccattaaat 619

                                     
Query: 493 gccctcccctatttcacagcataacc 518
           ||||||||||||| ||||||||||||
Sbjct: 618 gccctcccctattccacagcataacc 593


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)