BAC Information

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BAC

Clone NameMSMg01-503N05
Chromosome5 (Build37)
Map Location 122,815,907 - 122,816,307
singlet/doubletsinglet
Overlap gene1500011H22Rik
Upstream geneAU042671, Trafd1, C330023M02Rik, Erp29, Tmem116, Adam1b, Adam1a, Mapkapk5, Aldh2, 9330129D05Rik, Acad10, Brap, Atxn2, Sh2b3, A230106M15Rik, Cutl2, LOC100042693, Myl2, Ccdc63, Ppp1cc, Hvcn1, Tect1, Pptc7, Rad9b, Vps29
Downstream geneAtpbd1c, Arpc3, Anapc7, Atp2a2, Ift81, P2rx7, P2rx4, Camkk2, Anapc5, Rnf34, Fbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824, Bcl7a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503N05.T7 (MSMg01no503_n05.b1)MSMg01-503N05.TJ (MSMg01no503_n05.g1)
ACCAG578850AG578851
length750815
length of high quality
(start - end)
405 (57 - 461)64 (88 - 151)
definitionCHROMAT_FILE: MSMg01no503_n05.b1 PHD_FILE: MSMg01no503_n05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:13 2005CHROMAT_FILE: MSMg01no503_n05.g1 PHD_FILE: MSMg01no503_n05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTATCCCTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCTTTTGATTGCAAGCCTAAGCTACTTCATGTTTAG
TTGTTCTGGTTTTTGAGATAGGGTATCATTGAGCAGCTCTGAGTGGTCTT
GAATTTGCTATGTAGATCAGGCTGCCTTGGAACTCAGGTCCACTGCTTCT
GCCTTGAGACCTATGTCAAACCGCCATGGTTAGAGCTCATCACACTTAAA
ATGTCTAATCAAGACAATTAAAATGACTATATTTGGCTTAGCATTTTTTA
AGCTAAGTGCAAGGCCGGCATGGTAACCCTGCCCCCTTATAATTTTAGTG
CTTAGAGACAGACAGAAGGGCTGGGTCTATGAGACCTTGTTTCAAAAACA
AAAATCCATAACTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTTGCCCTCCCCTTTTCCTCTTTTTTCTCTTTTCTCTTTC
TCCTCTTTTTTCCTCTTTTCCTCCCCTTCCTTTTCCTATTTATTCCCTTT
CTCCTTGCTCTTTTTTACCTTCCCCTTCCTTCACTCTTCTTTTCTTTCTT
TCCCCCCTTCTTATCTTCTCCTCTTATCCCCCTGCCCCTTTTTTCCTACA
TATTTTTCTATCCTCCCCTTTTTTTTTTTCTTTTCCCCACATTTTCCCTC
AATTCCCCCTTTCCCCCCTCTTTTCTTCCCCTTTCTTTTCTTTTCTTTTN

CCTTCCTTTTCCACCATGCTATGGGXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAACCAGCCAGA
TACCTAGTAAGACCCTGTTGAAAGAAAGGAACAAAGAATGAAAAAAAGAG
GGGGAAAGGGGAGGGAAGGAAAGAGGCCAGGTGAGGCAAAAGGAAAGCCC
CCCCCTCCCCCCCTTCTTTCCCCCCCTATCCTCTCTCTCTTTCCCCCCCC
CCCCCTCCCCCCTCCTTCCCCCCCCCTCCTCCTCCCCTTGCCCCTCTCCC
CCCCCCCCCCCCCCCATTTTCCCCTCCCCCTTCTCTCCTTCCCCCCCCCC
CTCCTTCCCCCCCCCTTTTTCCCCCCCCCCCTCCCCCCCTCCCCCCCCTC
CCTTCCCCCCTCTCCCCCCCCCCTTTTCCCCCCCCCCCCCTCCTCTCTTC
CCCCCCCCCCCTTCCCCTCCCCCTCCTTCTTCCCCTCCCCCCCCTCTTCC
TTCCCTCCCCCCCCCCCCCCCTCCCTCTTCCCCCTCCCCCCTCCCCTTCC
CCCCCTTCCCCCCCTTTTCCCTCCCCCCCCCCCCCCTATTCCCCCCCCCT
TCCCCCCCCCCCTCTTCCCCCCTTCTCCCCCTTTTTTACTCCCCCCTTTC
CCCCCCCCCCCTCCTCCCCTTTCCCCCCCCTTCTCCCCCCCCCCTCCCCT
CCCCCCCTCTCCTTTTCTCTCCCCCCCCCCCCCGTCCCCTCCTCCCCCCC
TTCCCTTTCCCCCCCCTCTCTTCTCCCCCCCCCCCCCCTGTCCCCTTTTC
CCCCCCCCCCCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_n05.b1 MSMg01no503_n05.b1 CHROMAT_FILE:
MSMg01no503_n05.b1 PHD_FILE: MSMg01no503_n05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:13 2005
         (405 letters)



>mm_chr5_122815703_122816507
          Length = 805

 Score =  683 bits (353), Expect = 0.0
 Identities = 389/401 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttttgattgcaagcctaagctacttcatgtttagttgttctggtttttgagata 64
           |||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 205 gaattcttttgaatggaagcctaagctacttcatgtttagttgttctgatttttgagata 264

                                                                       
Query: 65  gggtatcattgagcagctctgagtggtcttgaatttgctatgtagatcaggctgccttgg 124
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 265 gggtatcattgagcagctctgagtagtcttgaatttgctatgtagatcaggctgccttgg 324

                                                                       
Query: 125 aactcaggtccactgcttctgccttgagacctatgtcaaaccgccatggttagagctcat 184
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 325 aactcaggtccactgcttctgccttgggacctatgtcaaaccgccatggttagagctcat 384

                                                                       
Query: 185 cacacttaaaatgtctaatcaagacaattaaaatgactatatttggcttagcatttttta 244
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 385 cacacttaaaatgtctaatcaagacaattaaaatgactatatttggcttaacatttttta 444

                                                                       
Query: 245 agctaagtgcaaggccggcatggtaaccctgcccccttataattttagtgcttagagaca 304
           ||||||||||||| |||||||||||||||||||||| |||||| |||||||||| |||||
Sbjct: 445 agctaagtgcaagcccggcatggtaaccctgcccccctataatcttagtgcttacagaca 504

                                                                       
Query: 305 gacagaagggctgggtctatgagaccttgtttcaaaaacaaaaatccataactcgtgtgt 364
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gacaaaagggctgggtctatgagaccttgtttcaaaaacaaaaatccataactcgtgtgt 564

                                                    
Query: 365 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 405
           |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 565 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtg 605


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space:   315216
Effective search space used:   315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)