TGTGTTTNCNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCTATGCTATTCTGCTAGTACCAAAATAAATATTTT
AAGATTTTTAAGTCAGTAATCACCCCTCCGGGGGAAAAAAAAAACATAAA
TTGCCAGATGTATTCTGCTGCCTGACACTAGATGTTAGTTGTAGCAGGTG
GCTCCTGCTTTCCTGTGATTTTGTGTCATTCAGTTAAGATTCAGATTCTA
AGATTTAGGTTCAGGAAGTCTGGATGATATTCAGCCTTTTTATATAAAAA
GCAGTGTTTTATTCCCTAACTACTGACAGTTTAATATAGTCAGCCATGAA
AAGAAAGATGTTATATACAGTTCTTCCAGAGCTTTCTGTGTCTTTCGTTG
AACTCATTAGGCACCTCACAGGGACCAAGTTGTGTTGCTTCTCAAAACCC
TGACCCTGAAGAGTGAACCAGCAACAAATTCCAAACCTATATGGGAAGAA
TTCTCACTTGATAAATTTTGACTCCTTAACACTGCTTGATTTTGTTTGAT
GCCCTAAGTCGCACTATGTTTGGTTCTATATTTCTTTCAAAGTATCAGTG
GTAGGGTTGTTTTTCAGGGGCTCCTACACCTATGCAGAAATGTATTTATT
CCTGACATCTAACTCTTGCAGCAGTAAGTACACTTGTAACGGCTCTGAAC
CAGCTTACTCACATCTCTTGCCTTGCTTAGGATG

CCTTTTTNTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGATTAGATCTGTA
CCCCATTTAAAAAACTTTTCATTGATATTTTGTGAATTTCATATCATGCA
CACCAATTTCACTCATCTTTCATCCCTTAATATCAGCCCTCTATCTTTGC
AACCCTCCCTTAAATAAAAGAAGTTAGAATAACAACAACAACAACAACAA
CAACAACAACATCTTGTCATCAAAGTTTTACTGTGCCACAATGTGTCACA
CCACACAGTACACCATTTTATCCACACATTTTTCCTTGCTAAGGTTCCTT
GCAATTAGTTCTTGGTCTTCTCCAAGTCCCCAGGCTTCTGCTATACTCTC
TGTTCTGGATCCTCACAGGGACTCCTCTCAGACATTCCGATGTTTTCCTG
TGTCATAGAGATCCTGCAGTTTTGGGTCTTAGAGGAACAGCCCTTTCTTG
AGCTCCAGTAGTTCACAGATGGAGTAGATGTTTGGACAGGGATCTGGGCC
TAGGAGGTAGCTGAGTTGGTCACCCAGCCAGCTCTTTCTCACTCTCACAA
GCAGTGCATGCACTGCCCACTCTTCCCCGAATAGCTCACCTAATGATACA
TTTGTTTTCTGTGTCCAATTCTTTGTATGTGATCAGAAATATAAATCCTA
TACTAATAAATATTTCTATAAACAAATTACATA

Query= MSMg01no503_p21.b1 MSMg01no503_p21.b1 CHROMAT_FILE:
MSMg01no503_p21.b1 PHD_FILE: MSMg01no503_p21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:26 2005
         (575 letters)



>mm_chr5_18637445_18638416
          Length = 972

 Score = 1046 bits (541), Expect = 0.0
 Identities = 563/571 (98%), Gaps = 3/571 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctatgctattctgctagtaccaaaataaatattttaagatttttaagtcagtaat 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 gaattctatgctatactgctagtaccaaaataaatattttaagatttttaagtcagtaat 713

                                                                       
Query: 65  cacccctccgggggaaaaaaaaaacataaattgccagatgtattctgctgcctgacacta 124
           |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 712 cacccctccggggg-aaaaaaaaccataaattgccagatgtattctgctgcctgacacta 654

                                                                       
Query: 125 gatgttagttgtagcaggtggctcctgctttcctgtgattttgtgtcattcagttaagat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 gatgttagttgtagcaggtggctcctgctttcctgtgattttgtgtcattcagttaagat 594

                                                                       
Query: 185 tcagattctaagatttaggttcaggaagtctggatgatattcagcctttttatataaaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tcagattctaagatttaggttcaggaagtctggatgatattcagcctttttatataaaaa 534

                                                                       
Query: 245 gcagtgttttattccctaactactgacagtttaatatagtcagccatgaaaagaaagatg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gcagtgttttattccctaactactgacagtttaatatagtcagccatgaaaagaaagatg 474

                                                                       
Query: 305 ttatatacagttcttccagagctttctgtgtctttcgttgaactcattaggcacctcaca 364
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 473 ttatatacagttcttccagagctttctgtgtctttcgttgaattcattaggcacctcaca 414

                                                                       
Query: 365 gggaccaagttgtgttgcttctcaaaaccctgaccctgaagagtgaaccagcaacaaatt 424
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 413 gggaccaagttgtgttgcttctcaaaaccctgaccctgaagattgaaccagcaacaaatt 354

                                                                       
Query: 425 ccaaacctatatgggaagaattctcacttgataaattttgactccttaacactgcttgat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ccaaacctatatgggaagaattctcacttgataaattttgactccttaacactgcttgat 294

                                                                       
Query: 485 tttgtttgatgccctaagtcgcactatgtttggttctatatttctttcaaagtatcagtg 544
           ||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||
Sbjct: 293 tttgtttgatgccctaaatcgcact--gtttggttctatatttctttcaaagtatcagtg 236

                                          
Query: 545 gtagggttgtttttcaggggctcctacacct 575
           |||||||||||||||||||||||||||||||
Sbjct: 235 gtagggttgtttttcaggggctcctacacct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 972
Length adjustment: 10
Effective length of query: 565
Effective length of database: 962
Effective search space:   543530
Effective search space used:   543530
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)