Query= MSMg01no504_f11.b1 MSMg01no504_f11.b1 CHROMAT_FILE:
MSMg01no504_f11.b1 PHD_FILE: MSMg01no504_f11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:55 2005
(661 letters)
>mm_chr5_39058222_39059281
Length = 1060
Score = 1197 bits (619), Expect = 0.0
Identities = 648/661 (98%), Gaps = 10/661 (1%)
Strand = Plus / Plus
Query: 5 gaattcttttttctcttatggacttctatgaagtttagtttctttcaaaagtttctaaca 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcttttttct-ttatggacttctatgaagtttagtttctttcaaaagtttctaaca 264
Query: 65 acaacaataacaacaacaaaaagtttctaacagttcactagttagtaaaatgggccgaaa 124
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 265 acaacaataacagcaacaaaaagtttctaatagttcactagttagtaaaatgggccgaaa 324
Query: 125 tgtctggttatttacaggaaattcaaatgtccaataaacactaacaaagatatatcattt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtctggttatttacaggaaattcaaatgtccaataaacactaacaaagatatatcattt 384
Query: 185 cattactatcagagatacagatgaaggcaatatagacattcaactttggtactgctaaat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cattactatcagagatacagatgaaggcaatatagacattcaactttggtactgctaaat 444
Query: 245 attatgttgaggttgttttttctccatgtcttaacctacttaaaaaaaaaaa---ggttt 301
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 445 attatgttgaggttgttttttctccatgtcttaacctacttaaaaaaaaaaaaaaggttt 504
Query: 302 agcatgtgtgtaaatataaatgccagtgtgtcagagtatggccatggccatcgctgtgtg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agcatgtgtgtaaatataaatgccagtgtgtcagagtatggccatggccatcgctgtgtg 564
Query: 362 gatgggccagctgggtaccactggattcttgcagcttcagtttgaaatgtgggtatggtg 421
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 565 gatgggccagctgggtaccactggattcttgcagcttcag----aaatgtgggtatggtg 620
Query: 422 accatttaagatggaaacaatgtgagacaactttctgttaaacaacagctcagtgttttg 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 accatttaagatggaaacaatgtgagacaactttctgttaaacaacagctcagtgttttg 680
Query: 482 gcaaaattgcttttggctatagcttaaatttttaacatcaaaattgaaaatatggaaaca 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcaaaattgcttttggctatagcttaaatttttaacatcaaaattgaaaatatggaaaca 740
Query: 542 taccagattcctaaatttt-taaaaaaaacactaatctgagcatactgaaaacaccaaag 600
||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||
Sbjct: 741 taccagattcctaaattatataaaaaaa-cactaatctgagcatactgaaaacaccaaag 799
Query: 601 tattttaaaggtgctggcaaagcagttataactgccattgcattttcttgttattgatag 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 tattttaaaggtgctggcaaagcagttataactgccattgcattttcttgttattgatag 859
Query: 661 g 661
|
Sbjct: 860 g 860
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1060
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1050
Effective search space: 683550
Effective search space used: 683550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no504_f11.g1 MSMg01no504_f11.g1 CHROMAT_FILE:
MSMg01no504_f11.g1 PHD_FILE: MSMg01no504_f11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:55 2005
(588 letters)
>mm_chr5_39251301_39252289
Length = 989
Score = 953 bits (493), Expect = 0.0
Identities = 523/533 (98%), Gaps = 1/533 (0%)
Strand = Plus / Minus
Query: 57 gcaaatgcaggtactaactctgaactcggtttacttagatatttattgaccttactgacc 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 986 gcaaatgcaggtactaactctgaactcggtttacttagatatttattgaccttaccgacc 927
Query: 117 ttttgacttggttacatggcagatcgagaagcaggttgatagcaccagagagggtgtgct 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926 ttttgacttggttacatggcagatcgagaagcaggttgatagcaccagagagggtgtgct 867
Query: 177 aaaagtgtccgagtgtctctcaagccctggctccactttacagctgtgtgatcctggggg 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 aaaagtgtccgagtgtctctcaagccctggctccactttacagctgtgtgatcctggggg 807
Query: 237 agttacctttctctgtgggtggctgagaaattacagagccgtctggacagcgggatgtgg 296
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 agttacctaactctgtgggtggctgagaaattacagagccgtctggacagcgggatgtgg 747
Query: 297 cctacagagggaagaacaacttggctttcagtggctcccagaggagcacttggtggcacg 356
|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 746 cctacagagggaagaacaacttggctttcagtggctcccagaagaacacttggtggcaca 687
Query: 357 cagagaatggttcattatggcaaataaatgccgacttagagcaggcactgctataaccca 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 cagagaatggttcattatggcaaataaatgccgacttagagcaggcactgctataaccca 627
Query: 417 aggggaaagctctggtaaca-gagcacccacagaccccatgggaggtcagcattgggcag 475
|||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 626 agggaaaagctctggtaacatgagcacccacagaccccatgggagttcagcattgggcag 567
Query: 476 actaacctctgtcccacaggatggggaagctagagcccatcctaggcccttattcttact 535
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 566 actaacctctgtcccacaggatggggaagctggagcccatcctaggcccttattcttact 507
Query: 536 gcagaggagtgagcagggaactccctggcataccgtctgaagatgggcttgtc 588
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gcagaggagtgagcagggaactccctggcataccgtctgaagatgggcttgtc 454
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 989
Length adjustment: 10
Effective length of query: 578
Effective length of database: 979
Effective search space: 565862
Effective search space used: 565862
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
