Query= MSMg01no504_l07.b1 MSMg01no504_l07.b1 CHROMAT_FILE:
MSMg01no504_l07.b1 PHD_FILE: MSMg01no504_l07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:23 2005
(556 letters)
>mm_chr5_65475126_65476081
Length = 956
Score = 1007 bits (521), Expect = 0.0
Identities = 548/557 (98%), Gaps = 2/557 (0%)
Strand = Plus / Plus
Query: 1 cagggctacccagagaaaccctatctgggggcagggagaatgaaaataggcaaatattag 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagggatacccagagaaaccctatctgggggcagggagaatgaaaataggcaaatattag 260
Query: 61 tattcctatcccagtattaagaagtgggctgttgccaacacccttgaagcattctcagca 120
|||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 261 tattcctatcccagtattcagaagtgggctgttgccaacatccttgaagcaatctcagca 320
Query: 121 gccccctgcatctcagcacattttagaagcccacaaaagcatagcattaccatatgtgtt 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccccctgtatctcagcacattttagaagcccacaaaagcatagcattaccatatgtgtt 380
Query: 181 cttctgtgacttgctccttttccttaatatgctgtggtcatgttggcttggcacaactgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttctgtgacttgctccttttccttaatatgctgtggtcatgttggcttggcacaactgt 440
Query: 241 agttaaattgttgggtcttatgaatgaatttattatataatttatctattttctgacagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agttaaattgttgggtcttatgaatgaatttattatataatttatctattttctgacagt 500
Query: 301 gaacatttgggttgtttccatttttagcggttcaaactaatgatgctttgaagtgttaca 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 gaacatttgggttgtttccatttttagtggttcaaactaatgatgctttgaagtgttaca 560
Query: 361 tcatacattcctgataggaatgcaaaacagcacaactacattggggaacagatttcatgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcatacattcctgataggaatgcaaaacagcacaactacattggggaacagatttcatgt 620
Query: 421 tcttataagttaaatatatacttaccatatggtccccaaacctcactcctaggaatttac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcttataagttaaatatatacttaccatatggtccccaaacctcactcctaggaatttac 680
Query: 481 acacacaaataaaaacatctc-catgatcagatgcttctattttacctgcacatgagttt 539
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acacacaaataaaaacatc-cgcatgatcagatgcttctattttacctgcacatgagttt 739
Query: 540 tgtggtagctttccaat 556
| |||||||||||||||
Sbjct: 740 tatggtagctttccaat 756
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space: 516516
Effective search space used: 516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no504_l07.g1 MSMg01no504_l07.g1 CHROMAT_FILE:
MSMg01no504_l07.g1 PHD_FILE: MSMg01no504_l07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:23 2005
(604 letters)
>mm_chr5_65652586_65653589
Length = 1004
Score = 1137 bits (588), Expect = 0.0
Identities = 600/604 (99%)
Strand = Plus / Minus
Query: 1 cagattgtatctagaactgtgcttgttgagggaccctgggccatggctgtaacctggcct 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 804 cagattgtatctagaactgtgcttgttgagggaccctgggccttggctgtaacctggcct 745
Query: 61 ttaggtgtttagttctttttaaatcagaaagtgctcagaggtctatgctgcctctgagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttaggtgtttagttctttttaaatcagaaagtgctcagaggtctatgctgcctctgagag 685
Query: 121 gtatatgccaaaaagattataaaggaagggccaagctctgtctttttgagttctcatggt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gtatatgccaaaaagattataaaggaagggccaagctctgtctttttgagttctcatggc 625
Query: 181 cttgttgggagaagaaacagaagtcctggagacattgaaagtgtattaaccagcatgaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cttgttgggagaagaaacagaagtcctggagacattgaaagtgtattaaccagcatgaaa 565
Query: 241 gatgtgtttcatggaggtcagtcggttattatggaaataaaacactgccttaaacctgag 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gatgtgtttcgtggaggtcagtcggttattatggaaataaaacactgccttaaacctgag 505
Query: 301 cgtactgagtcttgcccctctcttctgtgttgaaacttgcctgctgcagtgaaggcttcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cgtactgagtcttgcccctctcttctgtgttgaaacttgcctgctgcagtgaaggcttcc 445
Query: 361 tcacccagaggagatagatggttttttagtgcatatttttccatttctgttactttggga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcacccagaggagatagatggttttttagtgcatatttttccatttctgttactttggga 385
Query: 421 caaaaaagtcatgtttcccgctgttggatatgcattccaggaaagggctggtaatctgct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 caaaaaagtcatgtttcccgctgttggatatgcattccaggaaagggctggtaatctgct 325
Query: 481 tgctttcagaacaaaacacagtgctcctcacagttcacttatgatttaaatggtgaatgc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgctttcagaacaaaacacagtgctcctcacagttcacttatgatttaaatggtgaatgc 265
Query: 541 tgggaaaacgttttaaaataataaagtttagaaactgtaaatatgctgttttatacagga 600
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 264 tgggaaaacgttttaaaataataaagtttagaaactgtaaatatgctgtttaatacagga 205
Query: 601 ggac 604
||||
Sbjct: 204 ggac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
