BAC Information

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BAC

Clone NameMSMg01-504M05
Chromosome5 (Build37)
Map Location 58,890,799 - 58,891,290
singlet/doubletsinglet
Overlap geneLOC100041385
Upstream geneEG666465, Pcdh7
Downstream geneLOC100041396, LOC666499, EG625870, LOC100041425
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-504M05.T7 (MSMg01no504_m05.b1)MSMg01-504M05.TJ (MSMg01no504_m05.g1)
ACCAG579564AG579565
length7481,367
length of high quality
(start - end)
488 (52 - 539)---
definitionCHROMAT_FILE: MSMg01no504_m05.b1 PHD_FILE: MSMg01no504_m05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:28 2005CHROMAT_FILE: MSMg01no504_m05.g1 PHD_FILE: MSMg01no504_m05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTGTCTCGCTCTGAGCCCCATTTTTTAATGGGGTTATT
TGATTTTCTGATGTCCACCTTCTTAAGTTCTTTATATATGTTGGATAATG
ACTTTGTTGTTTGATTATTAGAATATAAAATCTGTTTCCTAGTGTTTGTT
GTTTTGGTTTTGGTTTTGGTTTTTTTTTTTTTTTTTTTTTTTGGGTTTTG
AGATTCTAAGCATTTAATTAATTAATGCTACACTTTATTTAGTTTCTTTG
TTTTCAGACATCAAAAAAAAATTTATCCCCTGGGAAAGTGTCTTTTATAG
TCAAGCTCTTGTGACCTATAGCAGAGTGTGGATCAAAACTTGGTCCTCCT
ATCCAGGTGCTGGCTATAAAATCTTGTCAAGGCTAAACATGTACTCAGCT
GTTAGGTGACACCTCAGCTCCCATTTTTTAAAAAAATTAGGTATTTATTT
CATTTACATTTCTAATGCTATCCCAAAAGTTTCCCCCCTCCCGCTACCCC
CTCTCCTGTTCCCCCATTCACCCACTTCCAATTCTTGGACCTGGGATTCC
CCCTGCCTGATTCTTTTTAAATCCGCCTGACCCATGGGCGTTTTCTCTCC
CATGTTTGTTAGTTATTGCCTCACCCGAAAGACTGGTTTGTATGCATTAT
TTATTTTTGGCTATCCCCGCGCCGCGTGATTTTAATTTTCCTTTTATG
CTTGCTTGAGGCACTCGATCGAGACGTGGTTGGGTCCCGCGGGCCGCCTC
GGCGCTCTTCTCCATTACGTATCTTTCTGCCACGCTGCCTTTTCTTGCGT
TCTCCTCTCGCCTCGTAGGTGCTCACTGCCCCGCGTGATACTACACGTCA
CATTACATACCCTCGCAGGCTACAGAAGACGCGCGAGATGAACGATAATT
AAAAGAATCGGCCAACCGCGCGCAATAATGCGCAGGCNCGCGCGCGTAGC
TCCCGCAACGAACGTATGATATGTACCGACGAAGTAGACACCAAGAATTA
TTTTCGGTTGCATTATCGTCGCGATGCAGATGAGAGCGTCCGCGGTTCGC
GTGCGCGTCGGAGCAGACGGGCTAGAGGCAGTGCGCGGCCCGTGTTTGCG
CGGACGATGTTACACGAACTCGTGTCTATTGCCACCATGTACCGCACCGA
ACCATCGCATCACACGCTCTATCCACTCTCCGCTCCGATTAACGTGATAT
ATATCCATACAGCGCATACATAGTAGCGCAAGTATATNAGTCGTCGCTGG
GCGCATACCGCGCGATACCGATTTTGTAGAGCACCGGTGTGAGGAGAAGT
CATGCGCCGGTAGTACCGGAGTCGCGTGTTNGGTGCGTGTTGGCGGCGCG
CGCGTATCGGGAACGGGTGCAGAGCGCCGGCCATTATATAACGTTCCCGT
ACATCCGACATCAGCTCTCCTGATAATCTACTACGTAACTCATTGATGTA
TAGGCGTTGTTATCTGTNCTATCCCGACGCGTAGACCAGCACGCGCTTAG
CGGATGTGGTGCGCCGCCGCGCGATATTCTATATACTATCGAGAGTATGA
GGAGATAATGCGAGTGCATTCGTGAAACTATTACTGTGTGTCGCGACGCG
CAGATCTTATCTATACTCCGCGCGACTTGACATCTACGTGAACAGCCGAG
AGCCCTCTCGATCACGACTATATGATTCGTCCATACCGACACATACTCAT
ATGCAATCGCTCGTAGACGCAAATACTATGAGCGAACGTTCGCGTANGAT
AGTATGATGGTGATCGCGCCGGTGGTATGTATTATGCGAAATAGACGTAT
ATGCCGGATAACCTTACCCATATATACCGCACGCGNTCGATGGAGCAGAG
CGGTCGAGTGCATTACGACTATAGCCNTGGAGGCATGAGACGACGTATAC
ACCGCACGCGCGCGCCGGTGTATTTACTACGTAATAGTATATTCTATATC
ACGAGTCCCGGCCGCGCGCCGCTTCGTGTATCGAATTATCGATACGCCTC
CGCTATCTACCCATAATCACGATTACAGCTCGCGCTCCACGCCACAGATC
GCGACATATATATAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no504_m05.b1 MSMg01no504_m05.b1 CHROMAT_FILE:
MSMg01no504_m05.b1 PHD_FILE: MSMg01no504_m05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:28 2005
         (488 letters)



>mm_chr5_58890608_58891490
          Length = 883

 Score =  785 bits (406), Expect = 0.0
 Identities = 467/498 (93%), Gaps = 20/498 (4%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttgtctc-gctctgagccccattttttaatggggttatttgattttctgatgt 63
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 192 gaattctttgt-tcagctctgagccccattttttaatggggttatttgattttctgaagt 250

                                                                       
Query: 64  ccaccttcttaagttctttatatatgttggataatgactttgttgtttgattattagaat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ccaccttcttaagttctttatatatgttggataatgactttgttgtttgattattagaat 310

                                                                       
Query: 124 ataaaatctgtttcctagtgtttgttgttttggttttggttttggttt------------ 171
           |||||||||||||||||||||||||||||||| ||||| ||||| |||            
Sbjct: 311 ataaaatctgtttcctagtgtttgttgttttgtttttgtttttgtttttttttttttttg 370

                                                                       
Query: 172 -ttttttttttttttttttttgggttttgagattctaagcatttaattaattaatgctac 230
            |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct: 371 gttttttttttttttttttttggtttttgagattctaagcatttaattaatttatgctac 430

                                                                       
Query: 231 actttatttagtttctttgttttcagacatcaaaaaaaaatttatcccctgggaaagtgt 290
           ||||||||||||||||||||||||||||||||||| ||     | |||||||||||||||
Sbjct: 431 actttatttagtttctttgttttcagacatcaaaacaa-----agcccctgggaaagtgt 485

                                                                       
Query: 291 cttttatagtcaagctcttgtgacctatagcagagtgtggatcaaaacttggtcctccta 350
           ||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 486 cttttttagtcaagctcttgtggcctatagcagagtgtggatcaaaacttggccctccta 545

                                                                       
Query: 351 tccaggtgctggctataaaatcttgtcaaggctaaacatgtactcagctgttaggtgaca 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tccaggtgctggctataaaatcttgtcaaggctaaacatgtactcagctgttaggtgaca 605

                                                                       
Query: 411 cctcagctcccattttttaaaaaaattaggtatttatttcatttacatttctaatgctat 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 cctcagctcccattttttaaaaaaattaggtatttatttcatttacatttctaatgctat 665

                             
Query: 471 cccaaaagtttcccccct 488
           ||||||||||||||||||
Sbjct: 666 cccaaaagtttcccccct 683


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 883
Length adjustment: 10
Effective length of query: 478
Effective length of database: 873
Effective search space:   417294
Effective search space used:   417294
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)