AAAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCG
CGGAATTCTTTGTTTAGCTGTGTACCCCATTTTTAATAGGGTTATTTCGT
TCTTTGGAGTCTAACTTCTTGAATTCTTTGTGTATTTTGGATATTAGCCT
TCTATCAGATGTAGGAATAGTAAAGATCTTTCCCCAGTCTGTTGCTTGCC
TTTTTGTCCTACTGACAATCAAAAAGATGTAATGCATTCCTGGTATTGGG
GGTTTCATTTGTTAGCATATGATTTCAATTTGAGATGTTCTCTTCCACAT
TTTATAAATTCACTTACATTCCTTTCATACGTGTCCATACTTTAGAAAGC
TTCTTCTGTAGTAGGTTTCTCTGTAGCTTTCCAAATGGCCATTAGTGTTA
ACTGTCCCTCTTATATTCTACTCTTTTACCCTCACACTCTATCTCATCCC
ATTTAATGTGCAATTATAATTTTTCTTTTATCTTATTTTAATACTATATT
CTGTTTTACCTTCCTTCTCCATGATCCCTTACTAGCTACCTAATCTCTGT
AGATATTCTGAGTGAACCACACATTTCTAAAGTTTAAAAACTAACAAATA
CATATATAGAAAATATGCAACTTTTTAAATTGTATCTGACTGCTTACTTG
GAATAATTGTTTTAGCTCCATCAATTAATCTGAAAATTTTATTTTAACAG
CTAATTAATATTCCATTGTGTAAATGTACATTTTCATTATTCATTCATTT
GTGGATA

GGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAAAATGAGGCAAGATGAGTATGTGTGCAATTG
CATACGAGTTAGGTTGGCAAAGAAAACACCTGGTGGGACTCATGGCTCTA
GTTGCATAAGTAGCAGAGGATGGCCTAGTCAGTCATCAATGGGAGGAGAG
GCCCTGGGTCCTGTGAAGGTTCTATGCCCCAGTATAGGGGAACACCAGAG
CCAGGAAGTGGGAGTGGGTGGGTTAGTGAGCAGGGGGAGGGAGGAAGGGA
TAGGGGNNTNTTTTTTTTTTTTTTNTTTTTTNTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA
TTTTTTTTTNTTTTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTCTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTCTTTTT
TTTTTTTNNTTNTTNTTTTNTTTTTTTCCTTTTCTTTTTTTNTTTCTTCT
TTTTTTCCTTTTTCCCTCTTTTTTTTTTTTTTTTTTCCTCTTTTTTTCCC
TTTTTTTTTTTGTTTCGTTGTTTTTCCTTTTTTTCTTTTTTTTCTTTCCT
TTTTTCTTTTTTTTTTTTTTTCCCATCGTTTTCCTTATTTTTTTCCCCCC
TTATTGCCCTTTTCTTGTTTTTCCTCTTGTTTTCTTTTTCTCTACACTTT
TTCATTACATTTTTTCCGCACCTTGT

Query= MSMg01no505_b22.b1 MSMg01no505_b22.b1 CHROMAT_FILE:
MSMg01no505_b22.b1 PHD_FILE: MSMg01no505_b22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:57 2005
         (684 letters)



>mm_chr5_43089470_43090553
          Length = 1084

 Score = 1029 bits (532), Expect = 0.0
 Identities = 571/584 (97%)
 Strand = Plus / Minus

                                                                        
Query: 101  tcagatgtaggaatagtaaagatctttccccagtctgttgcttgcctttttgtcctactg 160
            ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1084 tcagatgtaagattagtaaagatctttccccagtctgttgcttgcctttttgtcctactg 1025

                                                                        
Query: 161  acaatcaaaaagatgtaatgcattcctggtattgggggtttcatttgttagcatatgatt 220
            ||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 1024 acaatcaaatagatgtaatgcattcctggtattggggttttcattttttagcatatgatt 965

                                                                        
Query: 221  tcaatttgagatgttctcttccacattttataaattcacttacattcctttcatacgtgt 280
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 964  tcaatttgagatgttctcttccacattttataaactcacttacattcctttcatacgtgt 905

                                                                        
Query: 281  ccatactttagaaagcttcttctgtagtaggtttctctgtagctttccaaatggccatta 340
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 904  ccatactttagaaagcttcttctgtagtaggtttctctgtagcttttcaaatggccatta 845

                                                                        
Query: 341  gtgttaactgtccctcttatattctactcttttaccctcacactctatctcatcccattt 400
             |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844  ttgttaactgtccttcttatattctactcttttaccctcacactctatctcatcccattt 785

                                                                        
Query: 401  aatgtgcaattataatttttcttttatcttattttaatactatattctgttttaccttcc 460
            ||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784  aatgtccttttataatttttcttttatcttattttaatactatattctgttttaccttcc 725

                                                                        
Query: 461  ttctccatgatcccttactagctacctaatctctgtagatattctgagtgaaccacacat 520
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724  ttctccatgatcccttactagctacctaatctctgtagatattctgagtgaaccacacat 665

                                                                        
Query: 521  ttctaaagtttaaaaactaacaaatacatatatagaaaatatgcaactttttaaattgta 580
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 664  ttctaaagtttaaaaactaacaaatacatatatagaaaatatgcaacttttaaaattgta 605

                                                                        
Query: 581  tctgactgcttacttggaataattgttttagctccatcaattaatctgaaaattttattt 640
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604  tctgactgcttacttggaataattgttttagctccatcaattaatctgaaaattttattt 545

                                                        
Query: 641  taacagctaattaatattccattgtgtaaatgtacattttcatt 684
            ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544  taacagctaattaatattccattgtgtaaatgtacattttcatt 501


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space:   723876
Effective search space used:   723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)