BAC Information

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BAC

Clone NameMSMg01-505F12
Chromosome5 (Build37)
Map Location 60,976,764 - 61,155,180
singlet/doubletdoublet
Overlap geneLOC100041498
Upstream geneLOC546866, Cbfa2t2-ps1
Downstream geneLOC666597, EG666610
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-505F12.T7 (MSMg01no505_f12.b1)MSMg01-505F12.TJ (MSMg01no505_f12.g1)
ACCAG580006AG580007
length733728
length of high quality
(start - end)		661 (73 - 733)407 (322 - 728)
definitionCHROMAT_FILE: MSMg01no505_f12.b1 PHD_FILE: MSMg01no505_f12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:14 2005CHROMAT_FILE: MSMg01no505_f12.g1 PHD_FILE: MSMg01no505_f12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,976,764 - 60,977,424)(61,154,774 - 61,155,180)
sequence
CCCCTTGGGCCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCCATTTTCTGTAAACTGATCTTACACAAAAGGTGCCT
CAAAAATGAAAGAGTGAATCATATTGGAATACTGAATGTTCTCAAGACAC
TTTCTTGCATTTAAAATTTTGCCTTTTCAGTTTAAAGGTGTCTATGATTG
TGATGGGTTGGCCTAATGCTGCTTGTATTCTAATAGTATTTGGGAACTCC
AGAAGGATGTGCCTCAAAGACTGCAAATGGCCCTGGGACTCTCTCCCCAA
GTTAATTCTGATTGTTGAATAAATATGTCAATAGCCAATAGCTAGACAAA
AGAGAGATAGGTGGGGTTTAGGGTTCTTGGGCTTTAGACCATGAGAAGGA
TACAGAGAAAGAAGGAGCAGCCATTGATGAGGAAGAATGCTCAGGAAGAA
CTGGGAGTGGGGGCGGGTAATAGATTCTAAGCATGGAGGGGGGTATTGAG
AAGCCTAGCCTAAGATATATTTAAAAAATATAAAGGCTGTATGTGACTTT
CATCCAGGAACATAAATGATCAAAGGAGGTTAAATACCCCATGCCAGGAA
TTATTTCAATATGTTTTAACTACATATCATTTACTAAATATGCACACATT
CCTTTCATATGCAAACAATGAAATATGTTCACACATATGTTCATATACAC
ATAGATAAATAAATGTGCACATTCCAAATTTTA

TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTGCTCAAAAGGAATTCCAACACTCCCACACAGACATATATTC
AAGGAATAGACTAGTTCACATAACATAAAAATAATAAAAATAATCATCAA
AAGCATAAGGAAATCTCTCCATAATAGTGTCTTTGTTTAAATATCTTTAA
ACGTTCCTCCGAGTTAGCTAATATATATCTGAGCTAAAATATAGGTGAAC
TAAATATATGCTTAAGACAACTCTAAATGGTTATGGAGATGACTTAATGG
TGAAAAAGAGTTGTTTTTCNTACTTGGACTTGGGTATCCTTTTGAGAATC
CACATGGTGGCTTCCAACCATTGGTAACTACAGTTCCAGAGGATCTGATG
TCTTCTGACATCTTTGAGCATAGTGCATGCATATGGCACACACACATACA
TACAGGCATAACATTATTACAGCTTAAATAAGATAAACCTAAATAATGAA
AAGTCAATTCTAGTAAACACGATCGATTAAAGATGGTAGAAGGCCCAGAC
ACTCGGGGGACCAGGCAGGGCAGCTCTGATGAGCCTGAGATGTCCAAGGA
TGCTCTGAGGGAAATCATGACAGCAGAGGATTAGTTTTCAAAGCATGAGA
CATCACCAGCTCAACTTTTACAAGTCAGGTAAATTGGGAAGATGCTTCTA
ATATGTGGTCTCATGAAATTGGAAAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no505_f12.b1 MSMg01no505_f12.b1 CHROMAT_FILE:
MSMg01no505_f12.b1 PHD_FILE: MSMg01no505_f12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:14 2005
         (661 letters)



>mm_chr5_60976564_60977624
          Length = 1061

 Score = 1239 bits (641), Expect = 0.0
 Identities = 656/661 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtaaactgatcttacacaaaaggtgcctcaaaaatgaaagagtgaatcatattggaatac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtaaactgatcttacacaaaaggtgcctcaaaaatgaaagagtgaatcatattggaatac 260

                                                                       
Query: 61  tgaatgttctcaagacactttcttgcatttaaaattttgccttttcagtttaaaggtgtc 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 tgaatgttctcaagacactttcttgcatttaaaatttcgccttttcagtttaaaggtgtc 320

                                                                       
Query: 121 tatgattgtgatgggttggcctaatgctgcttgtattctaatagtatttgggaactccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatgattgtgatgggttggcctaatgctgcttgtattctaatagtatttgggaactccag 380

                                                                       
Query: 181 aaggatgtgcctcaaagactgcaaatggccctgggactctctccccaagttaattctgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaggatgtgcctcaaagactgcaaatggccctgggactctctccccaagttaattctgat 440

                                                                       
Query: 241 tgttgaataaatatgtcaatagccaatagctagacaaaagagagataggtggggtttagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgttgaataaatatgtcaatagccaatagctagacaaaagagagataggtggggtttagg 500

                                                                       
Query: 301 gttcttgggctttagaccatgagaaggatacagagaaagaaggagcagccattgatgagg 360
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 gttcttgggctttagaccatgagaatgatacagagaaagaaggagcagccattgatgagg 560

                                                                       
Query: 361 aagaatgctcaggaagaactgggagtgggggcgggtaatagattctaagcatggaggggg 420
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagaatgctcaggaagaacggggagtgggggcgggtaatagattctaagcatggaggggg 620

                                                                       
Query: 421 gtattgagaagcctagcctaagatatatttaaaaaatataaaggctgtatgtgactttca 480
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtattgagaagcctagcctaaggtatatttaaaaaatataaaggctgtatgtgactttca 680

                                                                       
Query: 481 tccaggaacataaatgatcaaaggaggttaaataccccatgccaggaattatttcaatat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tccaggaacataaatgatcaaaggaggttaaataccccatgccaggaattatttcaatat 740

                                                                       
Query: 541 gttttaactacatatcatttactaaatatgcacacattcctttcatatgcaaacaatgaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gttttaactacatatcatttactaaatatgcacacattcctttcatatgcaaacaatgaa 800

                                                                       
Query: 601 atatgttcacacatatgttcatatacacatagataaataaatgtgcacattccaaatttt 660
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 801 atatgttcacacatatgttcatatacacatagataaacaaatgtgcacattccaaatttt 860

            
Query: 661 a 661
           |
Sbjct: 861 a 861


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no505_f12.g1 MSMg01no505_f12.g1 CHROMAT_FILE:
MSMg01no505_f12.g1 PHD_FILE: MSMg01no505_f12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:14 2005
         (407 letters)



>mm_chr5_61154408_61155214
          Length = 807

 Score =  756 bits (391), Expect = 0.0
 Identities = 403/407 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttggacttgggtatccttttgagaatccacatggtggcttccaaccattggtaactac 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| 
Sbjct: 773 acttggacttgggtatccttttgagaatccacatggtggctcccaaccattggtaactat 714

                                                                       
Query: 61  agttccagaggatctgatgtcttctgacatctttgagcatagtgcatgcatatggcacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 agttccagaggatctgatgtcttctgacatctttgagcatagtgcatgcatatggcacac 654

                                                                       
Query: 121 acacatacatacaggcataacattattacagcttaaataagataaacctaaataatgaaa 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 653 acacatacatacaggcataacattattacaacttaaataagataaacctaaataatgaaa 594

                                                                       
Query: 181 agtcaattctagtaaacacgatcgattaaagatggtagaaggcccagacactcgggggac 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 593 agtcaattctagtaaacacgatcgattaaagatggtagaaggcccaggcactcgggggac 534

                                                                       
Query: 241 caggcagggcagctctgatgagcctgagatgtccaaggatgctctgagggaaatcatgac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 caggcagggcagctctgatgagcctgagatgtccaaggatgctctgagggaaatcatgac 474

                                                                       
Query: 301 agcagaggattagttttcaaagcatgagacatcaccagctcaacttttacaagtcaggta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 agcagaggattagttttcaaagcatgagacatcaccagctcaacttttacaagtcaggta 414

                                                          
Query: 361 aattgggaagatgcttctaatatgtggtctcatgaaattggaaaaat 407
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 aattgggaagatgcttctaatatgtggtctcatgaaattggaaaaat 367


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space:   317604
Effective search space used:   317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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