Query= MSMg01no505_f24.b1 MSMg01no505_f24.b1 CHROMAT_FILE:
MSMg01no505_f24.b1 PHD_FILE: MSMg01no505_f24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:16 2005
(559 letters)
>mm_chr5_32779125_32780083
Length = 959
Score = 1062 bits (549), Expect = 0.0
Identities = 556/559 (99%), Gaps = 2/559 (0%)
Strand = Plus / Plus
Query: 1 tcaaagtaacaaacaatcagcaaaactacttttttaaaaatacaaacccaacacagcttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaaagtaacaaacaatcagcaaaactacttttttaaaaatacaaacccaacacagcttt 260
Query: 61 aaatgaacgctcagattacagttgtgaaaaacttgggtttttctaagcagtttaggctgg 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatgaatgctcagattacagttgtgaaaaacttgggtttttctaagcagtttaggctgg 320
Query: 121 ctggccagggagagccccagggctctacctcctgtttctgtcttcctggtgctgggattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctggccagggagagccccagggctctacctcctgtttctgtcttcctggtgctgggattt 380
Query: 181 cttcaccctgctttttaacatgggtttttatgcttttaagatagtattattagctggcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttcaccctgctttttaacatgggtttttatgcttttaagatagtattattagctggcat 440
Query: 241 atttgccaaggtacatattaaatgacccacattcatcttttgatttaattataattgcca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttgccaaggtacatattaaatgacccacattcatcttttgatttaattataattgcca 500
Query: 301 ttaagtttcaacttatgaacaatgttgtattcttttatctctttcttgctagtttgatgt 360
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 ttaagtttcaacttatgaacaatgttgtattcttttatct--ttcttgctagtttgatgt 558
Query: 361 taaatgtagtcacagaatataatacaattttaatacgggtgcctgggttgacttttggat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 taaatgtagtcacagaatataatacaattttaatacgggtgcctgggttgacttttggat 618
Query: 421 ttttgatacaggctttttctgaagttcattctgtagaccaggctggccgaaaaatcatgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ttttgatacaggctttttctgaagttcattctgtagaccaggctggccgaaaaatcatgg 678
Query: 481 aatagagatccagctgcctctgtctcttgagtggtgggatcaagggtgtgtgccaccact 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 aatagagatccagctgcctctgtctcttgagtggtgggatcaagggtgtgtgccaccact 738
Query: 541 gcccagcctgactttttaa 559
|||||||||||||||||||
Sbjct: 739 gcccagcctgactttttaa 757
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space: 521001
Effective search space used: 521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no505_f24.g1 MSMg01no505_f24.g1 CHROMAT_FILE:
MSMg01no505_f24.g1 PHD_FILE: MSMg01no505_f24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:16 2005
(583 letters)
>mm_chr5_32926560_32927542
Length = 983
Score = 826 bits (427), Expect = 0.0
Identities = 430/431 (99%)
Strand = Plus / Minus
Query: 153 atagaaaagggtgaactatgtacatgtaacctacttattttctcacttatactttaaaat 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 983 atagaaaagggtgaactatgtacatgtaacctacttattttctcacttatactttaaaat 924
Query: 213 tatctttctattagctggtaatatgcaaggtaatatggtaatatgataataatgacaagg 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923 tatctttctattagctggtaatatgcaaggtaatatggtaatatgataataatgacaagg 864
Query: 273 aaagtcttcacgctcagtacagatacagcttatttcaacacctccccaccctgtggtact 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 aaagtcttcacgctcagtacagatacagcttatttcaacacctccccaccctgtggtact 804
Query: 333 aaaggttgaacccagtgtcttaggtaatgttagcaatctatcattgaactatatccctaa 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 aaaggttgaacccagtgtcttaggtaatgttagcaatctatcattgaactatatccctaa 744
Query: 393 cccctaagtcatattgttggctgtatctgaggttatagagcgcaaagataacgacagaca 452
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 743 cccctaagtcatattgttggctgtatctgaggttatagagcacaaagataacgacagaca 684
Query: 453 gctattgttaaagtccaaacaccatgttttgaataaaataaggtgaactctgtagtaagt 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gctattgttaaagtccaaacaccatgttttgaataaaataaggtgaactctgtagtaagt 624
Query: 513 aatacaacctgctcccccttctctatcttctttttttccttttttcttttctttcttttt 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aatacaacctgctcccccttctctatcttctttttttccttttttcttttctttcttttt 564
Query: 573 ttcttttgttt 583
|||||||||||
Sbjct: 563 ttcttttgttt 553
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space: 557529
Effective search space used: 557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
