BAC Information

Click to search

BAC

Clone NameMSMg01-505K19
Chromosome5 (Build37)
Map Location 123,494,123 - 123,494,667
singlet/doubletsinglet
Overlap geneMorn3
Upstream geneCutl2, Myl2, Ccdc63, Ppp1cc, Hvcn1, Tect1, Pptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7, Atp2a2, Ift81, P2rx7, P2rx4, Camkk2, Anapc5, Rnf34, Fbxl10, LOC100039895, Tmem142a
Downstream geneLOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824, Bcl7a, Mlxip, LOC673222, Il31, Lrrc43, B3gnt4, Diablo, Vps33a, Clip1, Zcchc8, Rsrc2, Kntc1, LOC100040005, Gpr109a, Gpr81, Denr, Ccdc62, Hip1r, Vps37b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-505K19.T7 (MSMg01no505_k19.b1)MSMg01-505K19.TJ (MSMg01no505_k19.g1)
ACCAG580255AG580256
length748768
length of high quality
(start - end)		545 (71 - 615)---
definitionCHROMAT_FILE: MSMg01no505_k19.b1 PHD_FILE: MSMg01no505_k19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:38 2005CHROMAT_FILE: MSMg01no505_k19.g1 PHD_FILE: MSMg01no505_k19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGGTTTTCACCTCTTTTTGTTTGTTTTTGAGACCCGGCCA
CGTTGTGTACATCAGGCTGGCCTAAAACTTGCCATGTAAATCAGGCTGGC
CTCCAGCTCAGAGATCTATCTACCTCTGCCTCCTGAGTGCTGGGCTTAAA
GGTGTGTACCATCAAGACCAGAGAGCAATACTTGCACTTAACTGCTGAAC
TCTCTCTCCAGCCCAACCCTTGGGTTTTTAAATCTAGAGCAGGTAGGGCC
TCAGGCTTATCTCATTTGCCTAATGATATTTGAAATATTGTGAAATAAGA
TATTCACGCTGGGAGATAAAATTTGATCTAGGCTATCCCTGAGAAGGGCA
AACTCACCCTGCATCCAGAACAGGGCTGCTAGCCTGTCCCCTTCTTTTCA
ACAATGTTTGTCCTGCAACAAAGAGAGACAGGGCTTGGGGAGAGGTGGCT
CAGTGGTTAAGAGCACTTGCTGCCTTTGCAGAGGACCTGGGTTCTGTCCC
CAGCAGCTCACAACCACCTGTAACCCCAGTTCCAGAGGGATCTGACACCC
TCTTCTGAACGCCATAGGCACCAGGCTCTCACATGCTGCATATACATACA
TACATACATACATACATACATACATACATACACATCAAGGCAAAAACACT
CATGTACATGAAATAAAATAGATCTTAAAAAAGACAAGGCTCACCATG

NCCCCATGACANNNNNNANCCNNGNNGGCCGCCTGTTCAACAACANNNAN
GNGACACNANANAATTCTCCACANNATTCANAGCCACANAANGANANGAC
GGGTTTGGCTTCTGACGGCCTTTGTGTTTTTTTTTTTTTTTTTTTTTTTG
GGGGTGGTTANNNNATTTNNNAAACCCATAAAATTACCNNCATACTGNCT
TGNAAACCCNGNTTTAAATCNTTCCCTCTGGAAANCCTTGGCNNNNNNNN
NTTCTTTTTCTCGTTTCTTTACCAATTTTCTATCTTTTCTCTTTGTTTTT
TTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAANNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNCNNNNCNCCCCCNCNCNNNNNNNNCCC
CCCNNNNNNNNCCNNCCCCCCCCCCACCCCCNNNNNNNNNNNNNNNNNNC
NCCCNNCNCCCCCCCCCNNNNNCCNCNCNNCCCCCCCCCCCCCCCCCCNN
NCNNNNCCCCCNNCNNCCCCCCCNCCCCNNCCNNCCCCCCCNNCNCCCCN
CCCCCCCCCNCCCCCNNNNNCCCCCNCCCNNNNCCCNNNNCCCCCCCCCC
CCCCCCCCNCCCCCCCCCNNNCCCCCCCCCCCCCCCCCCCNNNCNNNNNC
NNCCCCCCCCCCCCCCCCCCCNCCCCCCCCCNCCCCCCCCCCCNNNNNNC
CCCCNNNNCNCCCCCCNCNCCNNNNNNNNCCCNCCCCCCCCNCCCNCCCC
CCTGGTTGTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no505_k19.b1 MSMg01no505_k19.b1 CHROMAT_FILE:
MSMg01no505_k19.b1 PHD_FILE: MSMg01no505_k19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:38 2005
         (545 letters)



>mm_chr5_123493923_123494867
          Length = 945

 Score = 1046 bits (541), Expect = 0.0
 Identities = 544/545 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctttttgtttgtttttgagacccggccacgttgtgtacatcaggctggcctaaaactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctctttttgtttgtttttgagacccggccacgttgtgtacatcaggctggcctaaaactt 260

                                                                       
Query: 61  gccatgtaaatcaggctggcctccagctcagagatctatctacctctgcctcctgagtgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccatgtaaatcaggctggcctccagctcagagatctatctacctctgcctcctgagtgc 320

                                                                       
Query: 121 tgggcttaaaggtgtgtaccatcaagaccagagagcaatacttgcacttaactgctgaac 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgggcttaaaggtatgtaccatcaagaccagagagcaatacttgcacttaactgctgaac 380

                                                                       
Query: 181 tctctctccagcccaacccttgggtttttaaatctagagcaggtagggcctcaggcttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctctctccagcccaacccttgggtttttaaatctagagcaggtagggcctcaggcttat 440

                                                                       
Query: 241 ctcatttgcctaatgatatttgaaatattgtgaaataagatattcacgctgggagataaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcatttgcctaatgatatttgaaatattgtgaaataagatattcacgctgggagataaa 500

                                                                       
Query: 301 atttgatctaggctatccctgagaagggcaaactcaccctgcatccagaacagggctgct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atttgatctaggctatccctgagaagggcaaactcaccctgcatccagaacagggctgct 560

                                                                       
Query: 361 agcctgtccccttcttttcaacaatgtttgtcctgcaacaaagagagacagggcttgggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agcctgtccccttcttttcaacaatgtttgtcctgcaacaaagagagacagggcttgggg 620

                                                                       
Query: 421 agaggtggctcagtggttaagagcacttgctgcctttgcagaggacctgggttctgtccc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agaggtggctcagtggttaagagcacttgctgcctttgcagaggacctgggttctgtccc 680

                                                                       
Query: 481 cagcagctcacaaccacctgtaaccccagttccagagggatctgacaccctcttctgaac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagcagctcacaaccacctgtaaccccagttccagagggatctgacaccctcttctgaac 740

                
Query: 541 gccat 545
           |||||
Sbjct: 741 gccat 745


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space:   500225
Effective search space used:   500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |