Query= MSMg01no505_l05.b1 MSMg01no505_l05.b1 CHROMAT_FILE:
MSMg01no505_l05.b1 PHD_FILE: MSMg01no505_l05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:40 2005
(575 letters)
>mm_chr5_128199776_128200750
Length = 975
Score = 1065 bits (551), Expect = 0.0
Identities = 569/575 (98%)
Strand = Plus / Minus
Query: 1 tggcctcaaactcacagagctctgcctgcctctgcctcctgagcgctgaaattaaaggca 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 972 tggcctcaaactcacagagctctgcctgcctcttcctcctgagcgctgaaattaaaggca 913
Query: 61 tgagcctctactcccagctgttgcttgtttgtgaggtagactcttgctacttagctcagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 912 tgagcctctactcccagctgttgcttgtttgtgaggtagactcttgctacttagcccagg 853
Query: 121 cttgtcaggaacttaaaatcctcctgttttaacttcctacaatctagaagagcaagcatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 cttgtcaggaacttaaaatcctcctgttttaacttcctacaatctagaagagcaagcatg 793
Query: 181 taccaccacgtccagctattcccttatttttaatataatttggttgggggtggggatgat 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 taccaccacatccagctattcccttatttttaatataatttggttgggggtggggatgat 733
Query: 241 atgtgttttgtatgcctgctcatgtatgatgaagtgtgtgtattcattcctatgtatgtg 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 atgtgtgcagtatgcctgctcatgtatgatgaagtgtgtgtattcattcctatgtatgtg 673
Query: 301 tgttggatgtatgtatatgcacatgcctttggaggcccaaggttgatgccagaaataatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 tgttggatgtatgtatatgcacatgcctttggaggcccaaggttgatgccagaaataatc 613
Query: 361 tttcttggctcttctatcttattttttgagtcaaaacatactgagtaaattaaacccaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tttcttggctcttctatcttattttttgagtcaaaacatactgagtaaattaaacccaga 553
Query: 421 gctggtcttgacaaaccctcatttcaaaaacctgggtttaaaacaattaagatgtcatct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 gctggtcttgacaaaccctcatttcaaaaacctgggtttaaaacaattaagatgtcatct 493
Query: 481 ggagtctcatcaactaaaatacaaggacattcctttgagttccaattcatgggcatttac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ggagtctcatcaactaaaatacaaggacattcctttgagttccaattcatgggcatttac 433
Query: 541 agtaagatggtcccaccacacacacacacacacac 575
|||||||||||||||||||||||||||||||||||
Sbjct: 432 agtaagatggtcccaccacacacacacacacacac 398
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space: 545225
Effective search space used: 545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no505_l05.g1 MSMg01no505_l05.g1 CHROMAT_FILE:
MSMg01no505_l05.g1 PHD_FILE: MSMg01no505_l05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:40 2005
(523 letters)
>mm_chr5_128028506_128029428
Length = 923
Score = 880 bits (455), Expect = 0.0
Identities = 488/510 (95%), Gaps = 20/510 (3%)
Strand = Plus / Plus
Query: 1 tctctgcccagccctcaccatctgccctgcaaatagaaaagatgaaagtggggcccagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctctgcccagccctcaccatctgccctgcaaatagaaaagatgaaagtggggcccagag 260
Query: 61 tagccatacctgcagaaagagcgactggtcacagcaactattgctcagcacagggtgtta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagccatacctgcagaaagagcgactggtcacagcaactattgctcagcacagggtgtta 320
Query: 121 tttagtcaggttcagatactcagatgggactctgctctctccagaggacagtgtctagta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttagtcaggttcagatactcagatgggactctgctctctccagaggacagtgtctagta 380
Query: 181 ggagacaaatatgcaaatgaaagttagagcttagcgtggcaccacatgggtggtgggtga 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 ggagacaaatatgcaaatgaaagttagagcttagcatggcaccacatgggtggtgggtga 440
Query: 241 catctttagttcagaaatgtttgccgaactgcacatgtgtgcaattttccagcacaaatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catctttagttcagaaatgtttgccgaactgcacatgtgtgcaattttccagcacaaatc 500
Query: 301 aactctagataggttctcatgggagtcagtgacctagaatggttagattgagaactttct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aactctagataggttctcatgggagtcagtgacctagaatggttagattgagaactttct 560
Query: 361 gaaagctttcagattaaattcctgtgtatatgtcatcactacttacatatcatcttaggc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaagctttcagattaaattcctgtgtatatgtcatcactacttacatatcatcttaggc 620
Query: 421 tctctctctctctctctctctttctccctctccctctccctctccccccccctctctctc 480
||||||||||||||||||||| ||||| |||| |||| ||||||
Sbjct: 621 tctctctctctctctctctct------ctctc--tctc--tctc----------tctctc 660
Query: 481 tctctctttctccctctcccnctccctctc 510
|||||||||||||||||||| |||||||||
Sbjct: 661 tctctctttctccctctccctctccctctc 690
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 76
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space: 468369
Effective search space used: 468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
