Query= MSMg01no505_l21.b1 MSMg01no505_l21.b1 CHROMAT_FILE:
MSMg01no505_l21.b1 PHD_FILE: MSMg01no505_l21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:43 2005
(689 letters)
>mm_chr5_93751256_93752343
Length = 1088
Score = 1278 bits (661), Expect = 0.0
Identities = 679/685 (99%), Gaps = 1/685 (0%)
Strand = Plus / Minus
Query: 5 gaattctaagctattgctgagtttagcagcttgaaccttccaaagactttcggccaagct 64
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 gaattctaagctagtggtgagtttagcagcttgaaccttccaaagactttcggccaagct 829
Query: 65 ctagttttcaagtctgagaacagcagataactcgactcatctgggctagggttcatcaga 124
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 ctaattttcaagtctgagaacagcagataactcgactcatctgggctagggttcatcaga 769
Query: 125 gagacaatgcaaactgcaagatggtactgggacaaaaggaaaggacatacaggtaagagc 184
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 768 gagacaatgcaaactgcaagatggtactgggacaaaaggaaaggacatac-ggtaagacc 710
Query: 185 tgatgatattacaatcaagacaaatgattagtagatgggggtctgaagacaacagtctta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 tgatgatattacaatcaagacaaatgattagtagatgggggtctgaagacaacagtctta 650
Query: 245 atagaagtgaaggctaaagcaatcagaaaggtgagtaagaccactggaccccttaggaag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 atagaagtgaaggctaaagcaatcagaaaggtgagtaagaccactggaccccttaggaag 590
Query: 305 tcaatgcccaaggtattaaccacatatcaagaaggagaatagaacctaaagccaatcaca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 tcaatgcccaaggtattaaccacatatcaagaaggagaatagaacctaaagccaatcaca 530
Query: 365 tgtgccaacaggtcctagagcacttaatatgcatgtagactaaaaatgcagatgacatca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 tgtgccaacaggtcctagagcacttaatatgcatgtagactaaaaatgcagatgacatca 470
Query: 425 aggggaagagattctataatggtttttctctcattttatagcagaagcaggtcttgggtt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 aggggaagagattctataatggtttttctctcattttatagcagaagcaggtcttgggtt 410
Query: 485 caaatcccaagacctcttatatatcatctacagaggtacttcaggttaggcagttgagag 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 caaatcccaagacctcttatatatcatctacagaggtacttcaggttaggcagttgagag 350
Query: 545 gtgtgccttattccttaaatactatctcagatgtaagtcctgggtgacctactccaccct 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gtgtgccttattccttaaatactatctcagatgtaagtcctgggtgacctactccaccct 290
Query: 605 attatgtctttattggtcatttagacttatgcaaacacaggcatgattcagctcatgaca 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 attatgtctttattggtcatttagacttatgcaaacacaggcatgattcagctcatgaca 230
Query: 665 atctatgatcttgccacatcacaca 689
|||||||||||||||||| ||||||
Sbjct: 229 atctatgatcttgccacaccacaca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1088
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1078
Effective search space: 731962
Effective search space used: 731962
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no505_l21.g1 MSMg01no505_l21.g1 CHROMAT_FILE:
MSMg01no505_l21.g1 PHD_FILE: MSMg01no505_l21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:43 2005
(607 letters)
>mm_chr5_93617654_93618664
Length = 1011
Score = 1162 bits (601), Expect = 0.0
Identities = 607/611 (99%), Gaps = 4/611 (0%)
Strand = Plus / Plus
Query: 1 taccattccagaccatcccacaaaccatctcccacagttctaaggagccctatatacagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taccattccagaccatcccacaaaccatctcccacagttctaaggagccctatatacagt 260
Query: 61 ctgtctcctgctcagttctttgctgtttctctcctgagcacaggcggctggcctcctatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtctcctgctcagttctttgctgtttctctcctgagcacaggcggctggcctcctatg 320
Query: 121 tctttcccaatctctcatgtgaggcttgttgtgtggtgtgactctatggtatttcttggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctttcccaatctctcatgtgaggcttgttgtgtggtgtgactctatggtatttcttggc 380
Query: 181 tcctgactaccaggagacctttactctcagagctgaacatttacatatttagtaataaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctgactaccaggagacctttactctcagagctgaacatttacatatttagtaataaag 440
Query: 241 gtttcattaaaaacaaacaaaaaaagcctccaagtgaaccaaccaaacctaaagaataaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtttcattaaaaacaaacaaaaaaagcctccaagtgaaccaaccaaacctaaagaataaa 500
Query: 301 ccttgaaaggattccttacctcatcttcctcaacagtcttagcagccagaaaaaaacagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccttgaaaggattccttacctcatcttcctcaacagtcttagcagccagaaaaaaacagc 560
Query: 361 tgattgcaatacaattcaaatattttggatgggcctaaaattttaaaaagaaaaaaaaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgattgcaatacaattcaaatattttggatgggcctaaaattttaaaaagaaaaaaaaag 620
Query: 421 acat----gattattttgaattaagctctttgtttttaaaatctaaacatacatttaagt 476
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acattaatgattattttgaattaagctctttgtttttaaaatctaaacatacatttaagt 680
Query: 477 ttacaattctcctagtttacatcttcttaggcacaaaaataagtttcttttctgttcatt 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttacaattctcctagtttacatcttcttaggcacaaaaataagtttcttttctgttcatt 740
Query: 537 tataccagtcattgaataagtgctatgcaaaactctgaacttactgagtcacttccaaaa 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tataccagtcattgaataagtgctatgcaaaactctgaacttactgagtcacttccaaaa 800
Query: 597 ttttaaaacaa 607
|||||||||||
Sbjct: 801 ttttaaaacaa 811
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1011
Length adjustment: 10
Effective length of query: 597
Effective length of database: 1001
Effective search space: 597597
Effective search space used: 597597
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
