Query= MSMg01no505_m10.b1 MSMg01no505_m10.b1 CHROMAT_FILE:
MSMg01no505_m10.b1 PHD_FILE: MSMg01no505_m10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:46 2005
(694 letters)
>mm_chr5_108583532_108584625
Length = 1094
Score = 1083 bits (560), Expect = 0.0
Identities = 563/564 (99%)
Strand = Plus / Minus
Query: 131 tacctatccgtgtgtttggacatgcatttggaggccaaaggtcaacttgaagtctcatcc 190
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1094 tacctatccatgtgtttggacatgcatttggaggccaaaggtcaacttgaagtctcatcc 1035
Query: 191 tcaattgttctccacttcatttttttggaacagggtctcacagtgtgctaggggctcatc 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1034 tcaattgttctccacttcatttttttggaacagggtctcacagtgtgctaggggctcatc 975
Query: 251 gttttagctagactagctagacaacgtgttccaagattccacctgtctccatctccccag 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 974 gttttagctagactagctagacaacgtgttccaagattccacctgtctccatctccccag 915
Query: 311 tgctgagatacagatatgtgtatgcaatagtgtctagcgggtaccaagtgaatcatcttt 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914 tgctgagatacagatatgtgtatgcaatagtgtctagcgggtaccaagtgaatcatcttt 855
Query: 371 cctagcatagaagtagatttttttaaaaccaaaacagagtatcaggctttactgtggggt 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 cctagcatagaagtagatttttttaaaaccaaaacagagtatcaggctttactgtggggt 795
Query: 431 ttggtttcactacaataactttctcactccaacaacataaacaaaatataacataaatac 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 ttggtttcactacaataactttctcactccaacaacataaacaaaatataacataaatac 735
Query: 491 ttatcaactttgaaacatacatacattcctatacattccatacatacaattctatcccct 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 ttatcaactttgaaacatacatacattcctatacattccatacatacaattctatcccct 675
Query: 551 aatctggaaaacagtagagaagcatccttacactgaacaataaatttctaaagattacaa 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 aatctggaaaacagtagagaagcatccttacactgaacaataaatttctaaagattacaa 615
Query: 611 gtcttataaaaccaatctatagtatataatgttagatactcaattcaataatccatgcaa 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gtcttataaaaccaatctatagtatataatgttagatactcaattcaataatccatgcaa 555
Query: 671 aggttattttttaagttactaaaa 694
||||||||||||||||||||||||
Sbjct: 554 aggttattttttaagttactaaaa 531
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space: 741456
Effective search space used: 741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no505_m10.g1 MSMg01no505_m10.g1 CHROMAT_FILE:
MSMg01no505_m10.g1 PHD_FILE: MSMg01no505_m10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:46 2005
(648 letters)
>mm_chr5_108527400_108528450
Length = 1051
Score = 1176 bits (608), Expect = 0.0
Identities = 640/652 (98%), Gaps = 5/652 (0%)
Strand = Plus / Plus
Query: 1 caggatagccagggcacacagagcaacactggtcttggaaagccaaaag-aaaaaaacag 59
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 201 caggatagccagggcacacagagcaacact-gtcttggaaagccaaaagaaaaaaaacag 259
Query: 60 ccaaacaaaagacccaaaactctagtggtttgtgaaggtgaaaaggtgctgagctatttg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ccaaacaaaagacccaaaactctagtggtttgtgaaggtgaaaaggtgctgagctatttg 319
Query: 120 agatcaactaaagtgtataattgagaaaataacccttcgagtttcacattttgttgtttt 179
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agaccaactaaagtgtataattgagaaaataacccttcgagtttcacattttgttgtttt 379
Query: 180 tgttgttgtagagatcttgtgtaa---tattaaagttactatttccctaagttatagagt 236
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 380 tgttgttgtagagatcttgtgtaatattattaaagttactatttccctaagttatagagt 439
Query: 237 tatacaagttttttataactgctgatgtcagttttatagtgtttatagtatgtagttcta 296
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 440 tatacaagttgaatataactgctaatgtcagttttatagtgtttatagtatgtagttcta 499
Query: 297 caaatacatttatttcatgtaatgaagtaatatgggtataaaatgtaaacttttcttgta 356
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 500 caaatacatttatttcatgtaatgaactaatatgggtataaaatgtaaacttttcttgta 559
Query: 357 tcatagaaagtaagtcttgaaaggttcagtggcactcggtaggtcatataataacttagt 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tcatagaaagtaagtcttgaaaggttcagtggcactcggtaggtcatataataacttagt 619
Query: 417 taggacccagaaaaaacagatgttaggtcttctgaacacacatcctgtagctctgtctaa 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 taggacccagaaaaaacagatgttaggtcttctgaacacacatcctgtagctctgtctaa 679
Query: 477 cacctgtgtattattgagtaaacttaaagtgtattaaattgtttcttgatacttcacagc 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cacctgtgtattattgagtaaacttaaagtgtattaaattgtttcttgatacttcacagc 739
Query: 537 tggcagacacacccaaatctgaaagatatgagcacgttctggaggcattaaatgattaca 596
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 740 tggcagacacacccaaatctgaaagatatgagcatgttctggaggcattaaatgattaca 799
Query: 597 agaccatgtaagtggatttattttacatatccctctaagggagttagtaaga 648
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 agaccatgtaagtggatttattttacatatccctctaagggagttagtaaga 851
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1051
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1041
Effective search space: 664158
Effective search space used: 664158
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
