BAC Information

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BAC

Clone NameMSMg01-505O05
Chromosome5 (Build37)
Map Location 15,212,613 - 15,213,275
singlet/doubletsinglet
Overlap geneSpeer7-ps1
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik
Downstream gene4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-505O05.T7 (MSMg01no505_o05.b1)MSMg01-505O05.TJ (MSMg01no505_o05.g1)
ACCAG580415AG580416
length740747
length of high quality
(start - end)		663 (75 - 737)669 (79 - 747)
definitionCHROMAT_FILE: MSMg01no505_o05.b1 PHD_FILE: MSMg01no505_o05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:54 2005CHROMAT_FILE: MSMg01no505_o05.g1 PHD_FILE: MSMg01no505_o05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:54 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NCTAGTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCTCTTTCCTTGTTGAGTCTTTGTGTGGTTTCTGTATCA
GGGTGACTATGAACTCATAGAATGAGTTTAGCTATGTTTCTTCTGTTTCT
ACTGTATGAATAATTTGAGGAGTATTTCACTAACTCTTTTTTGAATATCT
AGTAGAATTCTGCACTACAACTTTCTGCCCTTGGGCTTTTTTGGAGTGGA
GGACTTTTAATGACTGTGTCTATTTTCTTAGGGGTTATAGGCCTGTTAGT
TACTTTACCAGATCTTCATTTAACTTTGATAATTGATAGCTGTCTATAAG
TCACCCATTTCATTTGGATTTTGCTATTTTTTGCAGTACAGACTTCTGCA
GTAAGACCTAGTGATTCTTTCAATTACCTCAATGTCCATTGTTATGTCTC
CTGTTTCATTTCTGATTTTGCTATTCTGGGTATTGTCTCTCTACCTTTCA
GTTAATTTGGCTAAGCATAAGTCTACCTTGTTGATTGTCTCAAAGAACAG
GATCTTGGTTTCACGGATTCTTTGTACAGTTCTCTCTGTATCAAATTGAC
TGAATTCAGCATTTATTCCCTGACGGCAAATCCTACCTATCTCTCCATGA
GATGAGGCTTTGTCTCACATTAAGAACTGCAGAATGCAATACATCAAAAC
CTTGTTGATCTCCATGGTGGTGATGCACACCACAGCCTCA

GGGCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGGGTA
GGTGACACTATAGATTCCTCCAAGGAATTCTAGGTCTGCAGCAGGGGACA
GAACACCTGAATAAGGAAGATGGTCTCAAGAGTCACTACTTGCAAATCAA
TTTTTATTCATAAGAAATAGAATTTTTAAAAAATAGGTTTTAAAAGTTCA
ATTAATATAGAGATAAAGGCAAAAACAAACAATGAAATACAAGAACATAT
AACTTCTAAATAACATAACAATAACTCAAAGAACAAAAATAAAAACTTAA
ACCAAAACTCTAAAGGAAAATTATTGTTTAGCTGCTTTCGCTTTCTGCAC
TTTTAGCAGCACAGCCCTCCAGCCTGCTGCTCCTCTTGGACACTAGGTAT
CAGTGCAGCCGCCTCAGTTCTCTGCTAAGAGACGTTGTCTGAAGAGAAAA
GGGAACAACGCCCTGAATCAGCCATGGCTTCCTAGTAAAGGCCTAGTCAC
CCTAAGAAAATGAATTATATGGAAGAAGATTCATCCGAGGAAGAAATTGG
GTGCTGGAGATAGTGCTCAGCAGCGGCCTCCTGGCCTGGCAACTCATTCT
GCAGGATGCTGTCTTCTTCAGCTGTGGCCAATCCCAGCTCTCTTGCAGTT
TCTGAGACCTGGGAGAGGAAGGCAGTTACTAAGACACAGGAATAGAGGAG
ACAGGCATGGCAGCTGTGAGGCTACTGCCTCCTACCCGTCAACTGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no505_o05.b1 MSMg01no505_o05.b1 CHROMAT_FILE:
MSMg01no505_o05.b1 PHD_FILE: MSMg01no505_o05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:54 2005
         (663 letters)



>mm_chr5_15212413_15213475
          Length = 1063

 Score = 1212 bits (627), Expect = 0.0
 Identities = 654/663 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagtctttgtgtggtttctgtatcagggtgactatgaactcatagaatgagtttagcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgagtctttgtgtggtttctgtatcagggtgactatgaactcatagaatgagtttagcta 260

                                                                       
Query: 61  tgtttcttctgtttctactgtatgaataatttgaggagtatttcactaactcttttttga 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtttcttctgtttctactttatgaataatttgaggagtatttcactaactcttttttga 320

                                                                       
Query: 121 atatctagtagaattctgcactacaactttctgcccttgggcttttttggagtggaggac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatctagtagaattctgcactacaactttctgcccttgggcttttttggagtggaggac 380

                                                                       
Query: 181 ttttaatgactgtgtctattttcttaggggttataggcctgttagttactttaccagatc 240
           |||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 381 ttttgatgactgtgtctattttcttagttgttataggcctgttagttactttaccagatc 440

                                                                       
Query: 241 ttcatttaactttgataattgatagctgtctataagtcacccatttcatttggattttgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcatttaactttgataattgatagctgtctataagtcacccatttcatttggattttgc 500

                                                                       
Query: 301 tattttttgcagtacagacttctgcagtaagacctagtgattctttcaattacctcaatg 360
           || |||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 501 taatttttgcagtacaggcttctgcagtaagacctagtgattctttcaatttcctcagtg 560

                                                                       
Query: 361 tccattgttatgtctcctgtttcatttctgattttgctattctgggtattgtctctctac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tccattgttatgtctcctgtttcatttctgattttgctattctgggtattgtctctctac 620

                                                                       
Query: 421 ctttcagttaatttggctaagcataagtctaccttgttgattgtctcaaagaacaggatc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctttcagttaatttggctaagcataagtctaccttgttgattgtctcaaagaacaggatc 680

                                                                       
Query: 481 ttggtttcacggattctttgtacagttctctctgtatcaaattgactgaattcagcattt 540
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttggtttcacggattctttgtactgttctctctgtatcaaattgactgaattcagcattt 740

                                                                       
Query: 541 attccctgacggcaaatcctacctatctctccatgagatgaggctttgtctcacattaag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 attccctgacggcaaatcctacctatctctccatgagatgaggctttgtctcacattaag 800

                                                                       
Query: 601 aactgcagaatgcaatacatcaaaaccttgttgatctccatggtggtgatgcacaccaca 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aactgcagaatgcaatacatcaaaaccttgttgatctccatggtggtgatgcacaccaca 860

              
Query: 661 gcc 663
           |||
Sbjct: 861 gcc 863


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space:   687609
Effective search space used:   687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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