BAC Information

Click to search

BAC

Clone NameMSMg01-505P01
Chromosome5 (Build37)
Map Location 4,475,019 - 4,475,469
singlet/doubletsinglet
Overlap genenone
Upstream geneCdk6, 5830415L20Rik, 1700109H08Rik, C030048B08Rik, Pex1, Gatad1, 4930511M11Rik, Ankib1, Krit1, 4932412H11Rik, LOC100041009, LOC667617, Mterf, Akap9, Cyp51, ENSMUSG00000053178, LOC100041073
Downstream geneFzd1, LOC667678, Pftk1, 1700015F17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-505P01.T7 (MSMg01no505_p01.b1)MSMg01-505P01.TJ (MSMg01no505_p01.g1)
ACCAG580454AG580455
length761768
length of high quality
(start - end)
693 (69 - 761)609 (76 - 684)
definitionCHROMAT_FILE: MSMg01no505_p01.b1 PHD_FILE: MSMg01no505_p01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:58 2005CHROMAT_FILE: MSMg01no505_p01.g1 PHD_FILE: MSMg01no505_p01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:33:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGGGATGGAAAAGACAGCATCTCATTAAAGCGATCATGAGTCCAC
CTCTCCCCAGCATGGCTTGAGGTGAGTCTGCCTTTCTAGGGAAGTCCCAC
TCTCTGGGGTGGAGATCACTTAGCCGGCTGATTGCCTGCCTCAACTGGAT
TAACTCTTTTGTTTTGGGGGTATTGTAATGTTAGGGCTCTATCTGGCCAG
AGATTCTATTGTCTTTGAGCAGAAGGAGTTTTCTTTAATGATCCTGCAGT
TCTGCTGTGCCAGGCAGGAGCCAGGCTAAGCCTCACGTTCACCCCCAGAA
GGCACAGTTGCATATCATTCAGTTAGTTGTAACCTCTTGTTTCCCTTAAA
TGTTTATTCTTCAATACCAATAGCATCCACTTTGTGTTCCAAGTTTTATT
TCAGTCAAACAAACTACATTTTTATCATCAATCTATTATATTTATTTGTG
TTTATTTATTTATTTATTTGACACAAAGACTTACTATATAGCCGTAGCCC
AGAACTCCCTTTGTAGGCTAAGTTGATCTCAGACTCATAGGGAGCCACTT
GCCTCTTCCCACTCAGTTCTAAGTTTACAGATGTGTATCACCACTCCTGG
CATAGAATGTCTTTTATACACTCATGTATCACATGAAATATCTGACATTA
TTATAGATGCTATTACAGACTCAAAAGCTCAGTGTTAAAGACAAAAGTGT
TTGTTGTCTGA
ATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXGTCAAGGCCCATACCTAAACAAGATAAAA
GCAATCTACAGCAAACCAGGAGCCAACATCAAAGTAAATGGAGAGAAGCT
GGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTC
CCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAA
CAAAGGAGATCAAGGGGATACAAATTGGAAAGGAGGAAGTCAAAATATCA
CTTTTTGCAGATGATATGATATTATATATAAGTGACCCTAAAAATTCCAC
CAGAGAACTCCTAAACCTGATAAACAGCTTTGGTGAAGTAGCTGGATATA
AAATTAACTCAAACAAGTCAATGGCCTTTCTCTACACAAAGAATAAACAG
GCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAA
TATAAAATATCTTGGTGTGACTCTAACTAAGGAAGTGAAAGATCTGTATG
ATAAAAACTTCAAATCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGA
TGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAACATTGTAAAAAT
GGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAA
TTCAACTCAATTCTTCAACGAATTAGAAGGAGCAATTTGCTAATTCATCT
GGTATAACAAAAAACCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no505_p01.b1 MSMg01no505_p01.b1 CHROMAT_FILE:
MSMg01no505_p01.b1 PHD_FILE: MSMg01no505_p01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:58 2005
         (693 letters)



>mm_chr5_4475006_4476097
          Length = 1092

 Score =  851 bits (440), Expect = 0.0
 Identities = 449/452 (99%), Gaps = 2/452 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagcatctcattaaagcgatcatgagtccacctctccccagcatggcttgaggtgagtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 acagcatctcattaaagcgatcatgagtccacctctccccagcatggcttgaggtgagtc 405

                                                                       
Query: 61  tgcctttctagggaagtcccactctctggggtggagatcacttagccggctgattgcctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tgcctttctagggaagtcccactctctggggtggagatcacttagccggctgattgcctg 345

                                                                       
Query: 121 cctcaactggattaactcttttgttttgggggtattgtaatgttagggctctatctggcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 cctcaactggattaactcttttgttttgggggtattgtaatgttagggctctatctggcc 285

                                                                       
Query: 181 agagattctattgtctttgagcagaaggagttttctttaatgatcctgcagttctgctgt 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 agagattctattgtc-ttgagcagaaggagttttctttaatgatcctgcagttctgctgt 226

                                                                       
Query: 241 gccaggcaggagccaggctaagcctcacgttcacccccagaaggcacagttgcatatcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 gccaggcaggagccaggctaagcctcacgttcacccccagaaggcacagttgcatatcat 166

                                                                       
Query: 301 tcagttagttgtaacctcttgtttcccttaaatgtttattcttcaataccaatagcatcc 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 165 tcagttagttgtaacctcttgtttcccttaaatgtttattcttcaataccaatagcattc 106

                                                                       
Query: 361 actttgtgttccaagttttatttcagtcaaacaaactacatttttatcatcaatctatta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 actttgtgttccaagttttatttcagtcaaacaaactacatttttatcatcaatctatta 46

                                           
Query: 421 tatttatttgtg-tttatttatttatttattt 451
           |||||||||||| |||||||||||||||||||
Sbjct: 45  tatttatttgtgttttatttatttatttattt 14


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1092
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1082
Effective search space:   739006
Effective search space used:   739006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)