Query= MSMg01no506_c02.b1 MSMg01no506_c02.b1 CHROMAT_FILE:
MSMg01no506_c02.b1 PHD_FILE: MSMg01no506_c02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:13 2005
(304 letters)
>mm_chr5_22427379_22428082
Length = 704
Score = 561 bits (290), Expect = e-164
Identities = 296/298 (99%)
Strand = Plus / Minus
Query: 7 gaattcagcgtcgtattactgttaaatttaacgaactatggttagaaaatgaatggttat 66
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 gaattcagcgtcgtacaactgttaaatttaacgaactatggttagaaaatgaatggttat 406
Query: 67 gagcttcacgaatcaaatgctcacatctacactgtgcctttcttgaattccaaatgtgtt 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gagcttcacgaatcaaatgctcacatctacactgtgcctttcttgaattccaaatgtgtt 346
Query: 127 aacaacaggcgtgactccacccctcattggcttgtcaccttacattttacaaggacaacc 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 aacaacaggcgtgactccacccctcattggcttgtcaccttacattttacaaggacaacc 286
Query: 187 agccttatattctgctcaccaaatctagctgtggctgtgctgggccccaggtgtattgaa 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 agccttatattctgctcaccaaatctagctgtggctgtgctgggccccaggtgtattgaa 226
Query: 247 aataagactgatgggaatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 aataagactgatgggaatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 168
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 19
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space: 205025
Effective search space used: 205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no506_c02.g1 MSMg01no506_c02.g1 CHROMAT_FILE:
MSMg01no506_c02.g1 PHD_FILE: MSMg01no506_c02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:13 2005
(522 letters)
>mm_chr5_22263341_22264262
Length = 922
Score = 878 bits (454), Expect = 0.0
Identities = 504/534 (94%), Gaps = 23/534 (4%)
Strand = Plus / Plus
Query: 1 atagaaaccagtttctatgatttatcagaacttcacataagctgttgggactttctgttg 60
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 189 atagaaaccagtttctatgatttatcagaacttcacataagctgtcgggactttctcttg 248
Query: 61 actatctttttaaaggtatgattgacaaaaccgactgtccctcttcaggacattttggca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 actatctttttaaaggtatgattgacaaaaccgactgtccctcttcaggacattttggca 308
Query: 121 agtcaccaaaaaa-cagctagtgaattcagaagtagagcactgtgaactgcctag----- 174
||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 309 agtcaccaaaaaaacagctagtgaattcagaagtagagcactgtggactgcctaggtggt 368
Query: 175 ------ctatacactgtctgcacctctgcagtaaacttcatcatgtttttgcaagtttag 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 cataagctatacactgtctgcacctctgcagtaaacttcatcatgtttttgcaagtttag 428
Query: 229 aaattagagttagaaattccatttcttgggaaaagtttgaggtttttcagattgaaaata 288
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 429 aaattagagttagaaattctatttcttggaaaaagtttgaggtttttcagattgaaaata 488
Query: 289 aacatttgataactcaaaacatggatcttagccacaggtaacaagacaaaccaaaaaaac 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 aacatttgataactcaaaacatggatcttagccacaggtaacaagacaaaccaaaaaa-- 546
Query: 349 aaagcaaagcaaaacaaaacaaaacaaaatgcttgtttcaagagaaaaagaatgagtccc 408
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 ---------caaaacaaaacaaaacaaaatgcttgtttcaagagaaaaagaatgagtccc 597
Query: 409 cactttctcctcttgatgccactcaaaggaaacataaataaattccaacttattttccca 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 cactttctcctcttgatgccactcaaaggaaacataaataaattccaacttattttccca 657
Query: 469 tccccttttcctgaacattggtttctattttatctctttgggaacctgaacagg 522
||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 658 tccccctttcctgagcattggtttctattttatctctttgggaacctgaacagg 711
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space: 466944
Effective search space used: 466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
