Query= MSMg01no506_d15.b1 MSMg01no506_d15.b1 CHROMAT_FILE:
MSMg01no506_d15.b1 PHD_FILE: MSMg01no506_d15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:21 2005
(635 letters)
>mm_chr5_37366895_37367929
Length = 1035
Score = 1160 bits (600), Expect = 0.0
Identities = 624/632 (98%), Gaps = 1/632 (0%)
Strand = Plus / Plus
Query: 5 gaattctttttatttaca-ttattatatgtattcattcagagggcaacttgtgggattca 63
|||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctttttattaaaaattattatatgtattcattcagagggcaacttgtgggattca 263
Query: 64 gttctctccttctctcatatggatgctgggactcgaactcagatcaccaggtttggcagc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gttctctccttctctcatatggatgctgggactcgaactcagatcaccaggtttggcagc 323
Query: 124 aatcacctgtgcctgcttgagccgtttcaccagccctgccagatcaacagatcaacaagg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aatcacctgtgcctgcttgagccgtttcaccagccctgccagatcaacagatcaacaagg 383
Query: 184 ttgtggaagcagcccacaaccttggttgcttgcttacatgtgggcctgacaggttttctc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttgtggaagcagcccacaaccttggttgcttgcttacatgtgggcctgacaggttttctc 443
Query: 244 tcttccacgggaagtttgattagtttagacagattgtaaagcccaaaatatttactatct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcttccacgggaagtttgattagtttagacagattgtaaagcccaaaatatttactatct 503
Query: 304 ggccctatgcaaaaatgctcgctaatccagtccaatcttcccactctacagatgggcaaa 363
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggccctatgcaaaaatgctcgataatccagtccaatcttcccactctacagatgggcaaa 563
Query: 364 gtgaagccaagaacacagacaggccaggaaatagctgggcatggtccccagcttcagcag 423
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 564 gtgaagccgagaacacagacaggccaggaaagagctgggcatggtccccagcttcagcag 623
Query: 424 gcctggacgataggctgagacggactacactgtccaacacagcactgggatgctctctag 483
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gcctggactataggctgagacggactacactgtccaacacagcactgggatgctctctag 683
Query: 484 cctccagagacacaggcacaggcctccattgcagacaaagagtgggcctgctgattccca 543
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 684 cctccagagacacaggcacaggcctccattgcagccaaagagtgggcctgctgattccca 743
Query: 544 cctgccagggcaccgtgaggagagaaaagatggcctatcaggtctctgtcctcctctccc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cctgccagggcaccgtgaggagagaaaagatggcctatcaggtctctgtcctcctctccc 803
Query: 604 tcctccttcccggtgtacttgggtctctgaca 635
||||||||||||||||||||||||||||||||
Sbjct: 804 tcctccttcccggtgtacttgggtctctgaca 835
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space: 640625
Effective search space used: 640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no506_d15.g1 MSMg01no506_d15.g1 CHROMAT_FILE:
MSMg01no506_d15.g1 PHD_FILE: MSMg01no506_d15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:21 2005
(570 letters)
>mm_chr5_37538426_37539395
Length = 970
Score = 967 bits (500), Expect = 0.0
Identities = 549/572 (95%), Gaps = 12/572 (2%)
Strand = Plus / Minus
Query: 1 actgacagcatcttacaaaactagaacactagggggcagcagagagaggcgcggagggct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 actgacagcatcttacaaaactagaacactagggggcagcagagagaggcgcggagggct 552
Query: 61 gccaacaggaggtgccgttgctccctccagccttatgtgctcagtgggttatccctacac 120
||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||
Sbjct: 551 gccaacaggaggtgccgttgctccctccagccttatgtgctcagtggattgtccctatac 492
Query: 121 ttttatcaggtatcccatcaatccctgctgccaggtgagacctatgccatgtgcagagac 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 491 ttttatcaggtatcccatcaatccctgctgccaggtgagacctatgccatgtgcagtgac 432
Query: 181 tttgggggatgaagataaggctgcacagggcagcagaagggaagggcctgcccaagggca 240
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 431 tttgggagatgaagataaggctgcgcagggcagcagaagggaagggcctgcccaagggca 372
Query: 241 ctctgtgcttctccagtatatgttgtagagggcagaacaagggaggcagccaggccaacc 300
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 371 ctctgtgcttctccagtatatgttgtagtgggcagaacaagggaggcagccaggccaacc 312
Query: 301 tgcagacaagtgatccttccctacactgcccctggaaagagatttgttaatatttaaaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tgcagacaagtgatccttccctacactgcccctggaaagagatttgttaatatttaaaac 252
Query: 361 atcatgtgccttttgctagtcgtctttagagaaacgctgctgggaaaaaaaaaaaaaaag 420
|||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 251 atcatgtgccttttgctagtcgtctttagagaaacgctgctggggaaaaaa--------- 201
Query: 421 atacccttacaaaaccagaaaagacagatcagttagttcaaaagaatatttttttcttaa 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 -tacccttacaaaaccagaaaagacagatcagttagttcaaaagaatatttttttcttaa 142
Query: 481 tctacttgtgacttgccctgtttaaacagaatcaataatcactagaggaaacaaatatga 540
|||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||
Sbjct: 141 tctacttgtgacttgccctgtttaaacagaatcagtagtaactagaggaaacaaatatga 82
Query: 541 ccaccatctgggatttaaaaaaaaa--tcccc 570
||||||||||||||||||||||||| |||||
Sbjct: 81 ccaccatctgggatttaaaaaaaaaaatcccc 50
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space: 537600
Effective search space used: 537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
