Query= MSMg01no506_f04.b1 MSMg01no506_f04.b1 CHROMAT_FILE:
MSMg01no506_f04.b1 PHD_FILE: MSMg01no506_f04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:29 2005
(680 letters)
>mm_chr5_68908424_68909503
Length = 1080
Score = 1261 bits (652), Expect = 0.0
Identities = 670/676 (99%)
Strand = Plus / Plus
Query: 5 gaattctctctcttacaatcacttctattgcatgatctaatttcagttgccaaaaaattg 64
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccctctcttataatcacttctattgcatgatctaatttcagttgccaaaaaattg 264
Query: 65 gagagtccctataaatcattgggaaaataaagtgtgggttgtatttcatttgcagtattc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gagagtccctataaatcattgggaaaataaagtgtgggttgtatttcatttgcagtattc 324
Query: 125 ataaaatttccatggccctcaatgtttgcacttttcttctttatttccataaatacatta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ataaaatttccatggccctcaatgtttgcacttttcttctttatttccataaatacatta 384
Query: 185 ttggttaaaaatttaatcaaaagactgtacaataaaacagatgaaacaaaccaagcaaat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttggttaaaaatttaatcaaaagactgtacaataaaacagatgaaacaaaccaagcaaat 444
Query: 245 gcacaaagcaaaaccaatctttatttttctttcttttgatactatcagtccaaccccagg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcacaaagcaaaaccaatctttatttttctttcttttgatactatcagtccaaccccagg 504
Query: 305 caagcaggatggtaatttatgcttttgttttaataagcatccttaatattgccatgcaaa 364
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 505 caagcaggatggtaatttatgcttttgttttaataagcatccctaatattgccatgcaaa 564
Query: 365 tattatgttcttgatttcctcattgcagagatgttatctaggaataaatatgcatttgta 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tattatgttcttgatttcctcattgcagagatgttatctaggaataaatatgcatttgta 624
Query: 425 agattctcttttgtttgagaaatctcataaaatgagagcctctatctgagatcacatttg 484
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggattctcttttgtttgagaaatctcataaaatgagagcctctatctgagatcacatttg 684
Query: 485 ggtatttagcctggcaaccagtagctactttcttctccagtgaaataaactgtcaggtac 544
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 685 ggtatttagcctggcaaccagtagctattttcttctccagagaaataaactgtcaggtac 744
Query: 545 tttgtattgactcaagatgaccttgttgcaatttcttggagtttaatgtgtcactaggat 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tttgtattgactcaagatgaccttgttgcaatttcttggagtttaatgtgtcactaggat 804
Query: 605 agacaagttggaggtaagcttcctgagcagaggaaaacatctaaaccacatcgataatca 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 agacaagttggaggtaagcttcctgagcagaggaaaacatctaaaccacatcgataatca 864
Query: 665 tttatttactaagttt 680
||||||||||||||||
Sbjct: 865 tttatttactaagttt 880
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space: 716900
Effective search space used: 716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no506_f04.g1 MSMg01no506_f04.g1 CHROMAT_FILE:
MSMg01no506_f04.g1 PHD_FILE: MSMg01no506_f04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:29 2005
(448 letters)
>mm_chr5_69067296_69068143
Length = 848
Score = 630 bits (326), Expect = 0.0
Identities = 338/342 (98%), Gaps = 1/342 (0%)
Strand = Plus / Minus
Query: 107 tgccagcttgcatagcaccatctgcgataatagtttgtgcctattatcttatcatattat 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 tgccagcttgcatagcaccatctgcgataatagtttgtgcctattatcttatcatattat 789
Query: 167 gtcctgttcagttgatatctctgggaggcctactcttttctgaagagaaatggaggagtg 226
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 788 gtcctgttcagttgatatctatgggaggcctactcttttctgaagagaaatggaggagtg 729
Query: 227 gattggggaaagaggagctgctgtaggggggggggagacaaatcagtggtcagatttaaa 286
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 728 gattggggaaagaggagctgctgta-gggggggtgagacaaatcagtggtcagatttaaa 670
Query: 287 tgtatgagaggagaattaattgtaaaaaattaaatggggctttaataccaagtctaagga 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tgtatgagaggagaattaattgtaaaaaattaaatggggctttaataccaagtctaagga 610
Query: 347 aatacttagataagagaactaacaacatcccatatattcatactcaattttcttgctctt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 aatacttagataagagaactaacaacatcccatatattcatactcaattttcttgctctt 550
Query: 407 tatgcttccgttcttattacagtttattttatagaggaactg 448
|||||||| |||||||||||||||||||||||||||||||||
Sbjct: 549 tatgcttctgttcttattacagtttattttatagaggaactg 508
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space: 367044
Effective search space used: 367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
