CCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCCACACTTCTTTCCATAGTGGCTGTACCACTTTCTGATCCCAAC
AGTGAATAAAGGGTTCTTTTCCTCTGCATCCCTTCCAGAATTTGTTGTTG
ATTATTCTTATCTTTGCCACTCAGAATGGGGAAAGATGAACTCTCAAAGT
TGATTTAATGTGCATTTTCCTAATTGAAAGGGGTGAGGAATATATCAAAT
GAAAAAAAAATCTGGAGTTTATATACTGCTTGTAGAGATTGATAAGGACA
TCATAGAGGTAAGATGCCAGCTTGTTCCCTGAGGAGTTTGCTGAGGGATT
GGATAAAGTGCTATGTGAATGCTTCCCATTACAATCCATATCCATATGTT
ATATTTAGATGTAGGATTTTCTATATATCCAGGCTTGCCTCATACTCGAT
CTTCCTGCCCCAGACCCTTGAGTGTTGGGATTGCAGGCATGTGCCATCAT
GCTTATGAATTCTAATGGATATATGATGCTCTCATCCTATATGAGTTCCT
TTTATGTTGCTTTGATAAAAACAGCATTGTGAGAAGCAATTTATATAGAG
TTTATAGGGACTCATGGTTTCAAAGTCATAAAAGTTCATCATGGCAGAAA
GGGATGTCAGCAGGAGAAGGAAGGTGAAAGAGCCCAACTTTCACTGCAAA
GATGTACCAGGAGAGAAAACTGGGAATGANGCAAGGCTGTTGATTGNTNA
AAGTCTGTCTCAGTGAAN

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATGCTGTAGTCTAGGCTGGCCTAGAAC
TCAATGATCTTCCTTCCTCAGCCTTCTAAGTGCTACAAAGTGAGAAATCA
ACACTTTTAGTGAAAACAACCGCTAAGCTAAGTGACTGTTTCAAAACCTT
TGAGGTATACTAAATTAGACCACCATTTTGCACCAACCCAAAGGCCACAA
CTATCATCAACTAACCTGAGACCTTAGCACTGATGTACCCACTTTGCTGT
AACTGTCCTGCCTGATGTTCCTGCATATTTGGTAAATGCACTGATTTATA
GTGTTTTGATTTGTGATTATAAAAGTTTATGCCGGGCAGTGGTGGCACAT
GCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATGTCTGAGTTC
AAGGTCAGCCTGGTCTATGAAAGACCCACAATGTGAGGACTCCCCCATGT
TCTGACTCAGGAGAAGCAACACCCCAAATCACTCACGAGAACCGGTCTTG
ATGCAAATTGCAAGAGGACTTTTATTTCAAGAACACTCTCAGGCCCACAG
TCATACACCATGCAGGGGTAGAGGCCCGTGGTGCACTGAGTAGCTGGGTA
AGGGGGTATTTAAAGGAAGAAACCACAACTCAAGAGGGTGAGGAGGGCAT
TGTTGGAAAATACCAAAATACCCATTATGTGGAAAGTCAAGAAAGTTTCT
ATGAGGCTCTAACATAACATAT

Query= MSMg01no506_h21.b1 MSMg01no506_h21.b1 CHROMAT_FILE:
MSMg01no506_h21.b1 PHD_FILE: MSMg01no506_h21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:43 2005
         (614 letters)



>mm_chr5_30200509_30201521
          Length = 1013

 Score = 1141 bits (590), Expect = 0.0
 Identities = 605/610 (99%), Gaps = 1/610 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctccacacttctttccatagtggctgtaccactttctgatcccaacagtgaataa 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 gaattctccacactactttccatagtggctgtaccactttctgatcccaacagtgaataa 709

                                                                       
Query: 65  agggttcttttcctctgcatcccttccagaatttgttgttgattattcttatctttgcca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 agggttcttttcctctgcatcccttccagaatttgttgttgattattcttatctttgcca 649

                                                                       
Query: 125 ctcagaatggggaaagatgaactctcaaagttgatttaatgtgcattttcctaattgaaa 184
            |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ttcagaatgaggaaagatgaactctcaaagttgatttaatgtgcattttcctaattgaaa 589

                                                                       
Query: 185 ggggtgaggaatatatcaaatgaaaaaaaaatctggagtttatatactgcttgtagagat 244
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 588 ggggtgaggaatatatcaaatg-aaaaaaaatctggagtttatatactgcttgtagagat 530

                                                                       
Query: 245 tgataaggacatcatagaggtaagatgccagcttgttccctgaggagtttgctgagggat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 tgataaggacatcatagaggtaagatgccagcttgttccctgaggagtttgctgagggat 470

                                                                       
Query: 305 tggataaagtgctatgtgaatgcttcccattacaatccatatccatatgttatatttaga 364
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 469 tggataaagtgctatgtgaatgcttccccttacaatccatatccatatgttatatttaga 410

                                                                       
Query: 365 tgtaggattttctatatatccaggcttgcctcatactcgatcttcctgccccagaccctt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tgtaggattttctatatatccaggcttgcctcatactcgatcttcctgccccagaccctt 350

                                                                       
Query: 425 gagtgttgggattgcaggcatgtgccatcatgcttatgaattctaatggatatatgatgc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gagtgttgggattgcaggcatgtgccatcatgcttatgaattctaatggatatatgatgc 290

                                                                       
Query: 485 tctcatcctatatgagttccttttatgttgctttgataaaaacagcattgtgagaagcaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tctcatcctatatgagttccttttatgttgctttgataaaaacagcattgtgagaagcaa 230

                                                                       
Query: 545 tttatatagagtttatagggactcatggtttcaaagtcataaaagttcatcatggcagaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 tttatatagagtttatagggactcatggtttcaaagtcataaaagttcatcatggcagaa 170

                     
Query: 605 agggatgtca 614
           ||||||||||
Sbjct: 169 agggatgtca 160


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1013
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1003
Effective search space:   605812
Effective search space used:   605812
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)