BAC Information

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BAC

Clone NameMSMg01-506J02
Chromosome5 (Build37)
Map Location 100,819,668 - 100,986,639
singlet/doubletdoublet
Overlap geneSec31a, LOC100041797, Lin54, Cops4, Plac8
Upstream geneA930011G23Rik, LOC100040738, LOC666364, LOC100040763, LOC100040774, Hnrpd, 4930524J08Rik, Hnrpdl, Enoph1, BC062109, LOC666417
Downstream geneCoq2, Hpse, Hel308, Mrps18c, Ccdc98, A230097K15Rik, LOC100041888, LOC100040902, Cycs-ps2, LOC100040920
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-506J02.T7 (MSMg01no506_j02.b1)MSMg01-506J02.TJ (MSMg01no506_j02.g1)
ACCAG580931AG580932
length726734
length of high quality
(start - end)		674 (53 - 726)591 (86 - 676)
definitionCHROMAT_FILE: MSMg01no506_j02.b1 PHD_FILE: MSMg01no506_j02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:49 2005CHROMAT_FILE: MSMg01no506_j02.g1 PHD_FILE: MSMg01no506_j02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,985,969 - 100,986,639)(100,819,668 - 100,820,258)
sequence
CTCCCCATCCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTAACCTTTTGCGTTTATCCCAAATTGCCTTACTTCCCT
GTTTCCTAGTGTGGATTTCTTTTTTAATGGATGAAAACTGCAGGCCTCAA
GCAAATAGTTCTTTAAATGATCTCATTTTATAGACTGTCATTCCCTGACT
TCCTTTGCCTAGAGCAATTTTTATTCCCTTTCCTTTGGATGTTCTTGGAC
ATTCGCTTCTCCGAGTGGGCTTTACCTACAAACTCCACCGAGCGCGAGCC
CGGCTTTAGTGCCCTTACCTTCCTGGTTCCCACCCCATGCCTCTGTGTTC
CTTTGCCTAATTCCTTGTCCAGGCTTTATGTGTATAAATGTGTCACAGTC
AGTATCTTAAAGCGAGTGTGGTTACATTTCCTGCCAAACTTTTACTTTCT
AAATTGGTTTTTAGGAGTACTTTGACCCCAAGTTCTTTGCCACTTCCCTA
AATCTCTTCCCAAACTGCTCGCCACATCACGTGCCCAGTGCTTTTCATCC
TGGTGTAATTGTTTTGAGCCAAATAGCGTCCGGGCTGTGAGATCTGACGT
TCTAAGTCTCCGTCTTGTACTCTCGGACTTGGTAGTTTGATTGACACTTA
TATTCTCAGAATTATAAAGTCCTAGAATGAAGAAGCAAGTGTTACATGGG
AGAAAGTCAGCTAACGTTTTCCTAAA

TAATTTACCCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTATTGAATGTTTAC
TGACTGATTTGATAAAATCTGTATAGAACCTGATAAAAACAAAAACACAT
AAATGTTTTACTTGAGGCAGTCACTTGACTTTCTCAGGGACTCACCTTCT
GCCCCAGATCTTCCTTTCTGTATCCCAGAAGCTCAAGGTATTTTCCACGA
GAATCCTCCTCAAAGTTTACCTTTGAAAAGAGACATTATCTTCAAAGACA
GACCTACATTTTAAACTAGTAACTCTAAAAGCTGCTTTTTAACCTATGTA
AGACTGTGTGCCCGTTGTGCTGGTCTGTGCATACTGAGTTGAGTGCTGGC
AGAGGTCAGGAGGACACCAGTTCCCTATAGCTGAGGCTGCAGCAGGCTGA
GGTCCCTAACCCAGTGCAGGGAGCCCAGCTCCGTCCGTCTGGAAGAGCTG
TCTCTACCGTACAATTGTAGACTAGGGATGGCTTATTTCAGACTGGGGCT
CACTATATAGCCTTGGCTGTCCTGGGACTTGCTACGTAGACCAGGCTGAC
CTTGAACATACAAAGCATCACCTGTCTCTGTCTCCTAAGTGCCACCACAT
CCCTAAATAACTTCTTTTAAAAACTAGTGTTTTGTTTGTTGGACACTGGA
TCTCAGGTAGCCCAAGCCTCACACTCAGATGCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no506_j02.b1 MSMg01no506_j02.b1 CHROMAT_FILE:
MSMg01no506_j02.b1 PHD_FILE: MSMg01no506_j02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:49 2005
         (674 letters)



>mm_chr5_100985766_100986839
          Length = 1074

 Score = 1266 bits (655), Expect = 0.0
 Identities = 667/671 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctaaccttttgcgtttatcccaaattgccttacttccctgtttcctagtgtgga 63
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 ggaattctaaccttctgtgtttatcccaaattgccttacttccctgtttcctagtgtgga 815

                                                                       
Query: 64  tttcttttttaatggatgaaaactgcaggcctcaagcaaatagttctttaaatgatctca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 tttcttttttaatggatgaaaactgcaggcctcaagcaaatagttctttaaatgatctca 755

                                                                       
Query: 124 ttttatagactgtcattccctgacttcctttgcctagagcaatttttattccctttcctt 183
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 754 ttttatagactgtcattccctgacttcctttgcctagagcaatttttattccctttgctt 695

                                                                       
Query: 184 tggatgttcttggacattcgcttctccgagtgggctttacctacaaactccaccgagcgc 243
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 694 tggatgttcttggacattcgcttctccgcgtgggctttacctacaaactccaccgagcgc 635

                                                                       
Query: 244 gagcccggctttagtgcccttaccttcctggttcccaccccatgcctctgtgttcctttg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 gagcccggctttagtgcccttaccttcctggttcccaccccatgcctctgtgttcctttg 575

                                                                       
Query: 304 cctaattccttgtccaggctttatgtgtataaatgtgtcacagtcagtatcttaaagcga 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 cctaattccttgtccaggctttatgtgtataaatgtgtcacagtcagtatcttaaagcga 515

                                                                       
Query: 364 gtgtggttacatttcctgccaaacttttactttctaaattggtttttaggagtactttga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gtgtggttacatttcctgccaaacttttactttctaaattggtttttaggagtactttga 455

                                                                       
Query: 424 ccccaagttctttgccacttccctaaatctcttcccaaactgctcgccacatcacgtgcc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ccccaagttctttgccacttccctaaatctcttcccaaactgctcgccacatcacgtgcc 395

                                                                       
Query: 484 cagtgcttttcatcctggtgtaattgttttgagccaaatagcgtccgggctgtgagatct 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 cagtgcttttcatcctggtgtaattgttttgagccaaatagcgtccgggctgtgagatct 335

                                                                       
Query: 544 gacgttctaagtctccgtcttgtactctcggacttggtagtttgattgacacttatattc 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gacgttctaagtctccgtcttgtactctcggacttggtagtttgattgacacttatattc 275

                                                                       
Query: 604 tcagaattataaagtcctagaatgaagaagcaagtgttacatgggagaaagtcagctaac 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tcagaattataaagtcctagaatgaagaagcaagtgttacatgggagaaagtcagctaac 215

                      
Query: 664 gttttcctaaa 674
           |||||||||||
Sbjct: 214 gttttcctaaa 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space:   706496
Effective search space used:   706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no506_j02.g1 MSMg01no506_j02.g1 CHROMAT_FILE:
MSMg01no506_j02.g1 PHD_FILE: MSMg01no506_j02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:49 2005
         (591 letters)



>mm_chr5_100819468_100820458
          Length = 991

 Score = 1104 bits (571), Expect = 0.0
 Identities = 586/591 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttattgaatgtttactgactgatttgataaaatctgtatagaacctgataaaaacaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttattgaatgtttactgactgatttgataaaatctgtatagaacctgataaaaacaaaaa 260

                                                                       
Query: 61  cacataaatgttttacttgaggcagtcacttgactttctcagggactcaccttctgcccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacataaatgttttacttgaggcagtcacttgactttctcagggactcaccttctgcccc 320

                                                                       
Query: 121 agatcttcctttctgtatcccagaagctcaaggtattttccacgagaatcctcctcaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatcttcctttctgtatcccagaagctcaaggtattttccacgagaatcctcctcaaag 380

                                                                       
Query: 181 tttacctttgaaaagagacattatcttcaaagacagacctacattttaaactagtaactc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttacctttgaaaagagacattatcttcaaagacagacctacattttaaactagtaactc 440

                                                                       
Query: 241 taaaagctgctttttaacctatgtaagactgtgtgcccgttgtgctggtctgtgcatact 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 taaaagctgctttttaacctatgtaagactgtgtgcccgttgtgttggtctgtgcatact 500

                                                                       
Query: 301 gagttgagtgctggcagaggtcaggaggacaccagttccctatagctgaggctgcagcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagttgagtgctggcagaggtcaggaggacaccagttccctatagctgaggctgcagcag 560

                                                                       
Query: 361 gctgaggtccctaacccagtgcagggagcccagctccgtccgtctggaagagctgtctct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctgaggtccctaacccagtgcagggagcccagctccgtccgtctggaagagctgtctct 620

                                                                       
Query: 421 accgtacaattgtagactagggatggcttatttcagactggggctcactatatagccttg 480
            |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cccgtacaattctagactagggatggcttatttcagactggggctcactatatagccttg 680

                                                                       
Query: 481 gctgtcctgggacttgctacgtagaccaggctgaccttgaacatacaaagcatcacctgt 540
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gctgtcctgggacttgctacatagaccaggctgaccttgaacatacaaagcatcacctgt 740

                                                              
Query: 541 ctctgtctcctaagtgccaccacatccctaaataacttcttttaaaaacta 591
           ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctctgtctcctgagtgccaccacatccctaaataacttcttttaaaaacta 791


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space:   569961
Effective search space used:   569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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