CCCCTTACTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAGA
TCCGCGGAATTCCAGAAAGATTCTAGTAGATTTGATTAATGTCTCCTTAC
ATCACATAGATATTTTCTACAGTGCATATAAGCACATATATTTTAGAATA
TACTGAAACTTAAAAATGTAAATTAAAAAAAAAAACAAAAACCTCTACCA
ACTTCAAATTAAAAAAACACATTTATTTTAGAATTCTCTAGGATACTCGC
AATTTCCTGTATTCCCTACTCATGATGTCCATATGTTAGCATCTTACAAA
TTTGTATGACAATAATGAGGAGAAAATAAAATTTGTAAGGAAAAAAAAAA
GACAGTTTTGTCTTAGACTACTTATTAACAAATGCCTGGGCCACAAACTG
TGGCTTATTCCCAGAATAACGTATTTAACACATTCAAAATATTTTATGTT
TTGTACATTTTTAGTTACCCCTTTATCTATTTACTTAGCATCTTCCTAAA
TATCTCCCTTAGCATATGTGCCAGCATCTGTCCCTGAATCTGTTTATTCT
CCTAATATTTCATAGAATACTCTCTTTTTGAAAAGTCTCACCTCATATTT
TCTTCCTCAGCTCATTTGTCATACACATTATTTAATTGACAGATGATGTT
TATAAGAGAGTCTCAAAATTTGTGGCACTAATAACAACTAAATATCTCAT
TTAACATATATAAAGTAGGTTTTCGCGTATGCCACATGGCN

GCTTGCCCAATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCG
AATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGG
AAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATG
GCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGA
AAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCAC
TCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGTCATAGTACTACCA
GAGGATCCAGCAATACCTCTCCAGGGCATATATCCAGAAGATGCCCCAAC
TGGTAAGAAGGACACATGCTCCACTATGTTCATCGCCACCTTATTTATAA
TAGTCAGAAGCTGGAAAGAACTCAGATACCCCTCAACAGAGGAATGGATA
CAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAA
GAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCA
TCCTGAGTGAGGTAATACATTCACAAAGGAACTCACACAATATGTACTCA
CTGATAAGTGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATA
CAATTTCCTAAACACCTGAAACTCAAGAAAAATGAAGACTGAAGTGG

Query= MSMg01no506_k01.b1 MSMg01no506_k01.b1 CHROMAT_FILE:
MSMg01no506_k01.b1 PHD_FILE: MSMg01no506_k01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:54 2005
         (567 letters)



>mm_chr5_126312556_126313520
          Length = 965

 Score =  228 bits (118), Expect = 7e-64
 Identities = 388/504 (76%), Gaps = 61/504 (12%)
 Strand = Plus / Plus

                                                                       
Query: 13  tctccttacatcacatag-atattttctacagt-gcatataag---cacatatattttag 67
           ||||||||||||||| || | ||||||||| || | ||||||    ||||||||||||||
Sbjct: 217 tctccttacatcaca-aggacattttctactgtag-atataataaacacatatattttag 274

                                                                       
Query: 68  aatatactgaaactt-aaaaatgtaaattaaaaaaaaaaacaaaaacctctaccaacttc 126
           ||||||| ||||||| ||||||| ||||  ||||||| |       |||||||| |||| 
Sbjct: 275 aatatacagaaacttgaaaaatggaaatggaaaaaaata-------cctctaccgacttt 327

                                                                       
Query: 127 aaattaaaaaaacacatttattttagaattctctaggatactcgcaatttcctgtattcc 186
            |||||||||| |||||||||||||||||||||||||||| | ||||||||| | || ||
Sbjct: 328 gaattaaaaaa-cacatttattttagaattctctaggatagttgcaatttcccgcatacc 386

                                                                       
Query: 187 ctactcatgatgtccatatgttagcatcttaca-aatttgtatgacaataatgaggagaa 245
           |||| |||||| ||||||| ||||||||||||| |||  |||||| |||||| |||||||
Sbjct: 387 ctacacatgatttccatatattagcatcttacataatc-gtatgaaaataattaggagaa 445

                                                                       
Query: 246 aataaaatttgtaaggaaaaaaaaaagacagtttt---------gt--ct--t------- 285
           | |||  |||||||    ||||||||  | |||||         ||  ||  |       
Sbjct: 446 attaacctttgtaa----aaaaaaaatcc-gtttttccttccctgttcctgctccctgaa 500

                                                                       
Query: 286 -----------agactacttattaacaaatgcctgggccacaaactgtggcttattccca 334
                      |||||| |||||||||||||||| |||||||| || |||||  ||||  
Sbjct: 501 tgacgactctgagactatttattaacaaatgcctaggccacaagctttggctccttcctg 560

                                                                       
Query: 335 gaataacgtatttaacacattcaaaatattttatgttttgtacatttttagttacc-c-c 392
           || |||| |||||||| |||||||| |||| || || || |||||  |||| |||| | |
Sbjct: 561 gactaacttatttaacccattcaaactattctaagtcttctacatggttagatacctctc 620

                                                                       
Query: 393 ttt-atc-tatttacttagcatcttcctaaatatctcccttagcatatgtgccagcatct 450
           ||| ||| | ||  |||||||||||||| || |||||||||||||| ||  |||||||||
Sbjct: 621 tttcatcctcttc-cttagcatcttcctcaacatctcccttagcatctgccccagcatct 679

                                   
Query: 451 gtccctgaatctg--tttattctc 472
            |||||||||||   |||||||||
Sbjct: 680 ttccctgaatctccttttattctc 703


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 965
Length adjustment: 10
Effective length of query: 557
Effective length of database: 955
Effective search space:   531935
Effective search space used:   531935
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)