XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAGGC
TTATCCAGAAACTTTTTCTCAAAATGATGAACTAGCACTGAAAAATACAG
CAAAAATTGCTATCTGGCATACACACACACACTGACACACATGCACATAA
ACAAGTATACATGTGGACCACACACATACATTCAACACGCATACAACTCA
CACATATGCACATGCACACACAAAATGATATATACTAATAATGGAAAATC
AAAAGTAGGGTATATAATGCTCAGTGATGGACAACAATCCAGGCTATTTT
TTAACATTTGTTGTAAATGGCTAGGGCAGAGCATAATGATAACCATAAAA
ATCCCTATGAAGTATGTTTGTGAATCTCAGAAAAAAGTGTGGAGCAGCTC
TCATTTTAACATGTATAATTTATTTTGTTAAGAAATGTATGGTGTTCTGA
AAATTCATGGACCTTGAACTTTATATTCAAACTAAATAGTTATAAGTAGC
ATAATCTAACTACTAACTGAAAGATTAGAAAAAATAAAAAGTTGATCTCA
TAGGAACTAAAAGTGAAATTGTTGTTTCCAAGAGCCTCTGANAGCAGGAA
GGAGATTGAAGACAGGGATGGAGGGAATCTGACTAATGAAGAATAATTGT
GATAAGACATTTTCATATCCCGTTTATAATTGATTTTGGATAGTAGCAAT
TCACTGTATAGTTGAT

NNNNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTAAGGAATACCGAAT
GGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAA
TGCATATCAAAACAACCCTGAGATTCCACCTCACACCAGTCATAATGGCT
AAGATCAAAAACTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAG
AGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCT
GGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAG
GATCCAGCAATACCTCTCCTGGGCATATATCCAAAAGATGCCCCAACTGG
TAAGAAGGACACATGCTCCACGATGTTCATAGCAGCTTTATTTATAATAG
CCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAG
AAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAA
TGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCC
TGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTG
ATAAGTGGATATTAGCCCAAAACCTANGATACCCAAGATATAAGGTACAA
TTTCCTAAACACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGGATAC
TATG

Query= MSMg01no507_f15.b1 MSMg01no507_f15.b1 CHROMAT_FILE:
MSMg01no507_f15.b1 PHD_FILE: MSMg01no507_f15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:52 2005
         (640 letters)



>mm_chr5_10784762_10785800
          Length = 1039

 Score = 1125 bits (582), Expect = 0.0
 Identities = 622/637 (97%), Gaps = 5/637 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaggcttatccagaaactttttctcaaaatgatgaactagcactgaaaaataca 64
           |||| ||||||||| | |||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaatcctaggcttagcgagaaa-attttctcaaaatgatgaactagcactgaaaaataca 263

                                                                       
Query: 65  gcaaaaattgctatctggcatacacacacacactgacacacatgcacataaacaagtata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gcaaaaattgctatctggcatacacacacacactgacacacatgcacataaacaagtata 323

                                                                       
Query: 125 catgtggaccacacacatacattcaacacgcatacaactcacacatatgcacatgcacac 184
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 catatggaccacacacatacattcaacacgcatacaactcacacatatgcacatgcacac 383

                                                                       
Query: 185 acaaaatgatatatactaataatggaaaatcaaaagtagggtatataatgctcagtgatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acaaaatgatatatactaataatggaaaatcaaaagtagggtatataatgctcagtgatg 443

                                                                       
Query: 245 gacaacaatccaggctattttttaacatttgttgtaaatggctagggcagagcataatga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gacaacaatccaggctattttttaacatttgttgtaaatggctagggcagagcataatga 503

                                                                       
Query: 305 taaccataaaaatccctatgaagtatgtttgtgaatctcagaaaaaagtgtggagcagct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 taaccataaaaatccctatgaagtatgtttgtgaatctcagaaaaaagtgtggagcagct 563

                                                                       
Query: 365 ctcattttaacatgtataatttattttgttaagaaatgtatggtgttctgaaaattcatg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctcattttaacatgtataatttattttgttaagaaatgtatggtgttctgaaaattcatg 623

                                                                       
Query: 425 gaccttgaactttatattcaaactaaatagttataagtagcataatctaactactaactg 484
           | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 624 ggccttgaactttatattcaaactaaagagttataagtagcataatctaactactaactg 683

                                                                       
Query: 485 aaagatta-gaaaaaataaaaagttgatctcataggaactaaaagtgaaattgttgtttc 543
           ||||||||  |||||| ||||||||||||||||||||||||||||||||||||||   ||
Sbjct: 684 aaagattacaaaaaaaaaaaaagttgatctcataggaactaaaagtgaaattgtt---tc 740

                                                                       
Query: 544 caagagcctctganagcaggaaggagattgaagacagggatggagggaatctgactaatg 603
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caagagcctctgaaagcaggaaggagattgaagacagggatggagggaatctgactaatg 800

                                                
Query: 604 aagaataattgtgataagacattttcatatcccgttt 640
           |||||||||||||||||||||||||||||||||||||
Sbjct: 801 aagaataattgtgataagacattttcatatcccgttt 837


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1039
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1029
Effective search space:   648270
Effective search space used:   648270
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)