BAC Information

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BAC

Clone NameMSMg01-507L06
Chromosome5 (Build37)
Map Location 84,676,589 - 84,836,509
singlet/doubletdoublet
Overlap geneEpha5
Upstream geneSrd5a2l2, LOC100039608, LOC231368, LOC100039489
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507L06.T7 (MSMg01no507_l06.b1)MSMg01-507L06.TJ (MSMg01no507_l06.g1)
ACCAG581789AG581790
length760775
length of high quality
(start - end)		671 (48 - 718)396 (334 - 729)
definitionCHROMAT_FILE: MSMg01no507_l06.b1 PHD_FILE: MSMg01no507_l06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:20 2005CHROMAT_FILE: MSMg01no507_l06.g1 PHD_FILE: MSMg01no507_l06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,676,589 - 84,677,255)(84,836,114 - 84,836,509)
sequence
NATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTAGCAGATGTTTCACATTACATAAATAATAATTTAGAAATTC
ATTGCAATAATAATTATGATTGCTATCCCAGTATACAGGCTCAATATTTC
CTCTGCCAAGTTAAAATGGACTTACATTTTAGGATCCTACAAGTGTGAAA
CTAGAAATGAACTTGAAGGTACATGACATATAAACACACAAAAGGGTACA
AATAACACTCAGAAATAACTCTGCACATCCTTTATATGTACCATAGGAAA
ATAATAGTAACTGCAAATAGAACACGGGCTTTAAAAAAACGTATCTTTAG
ATATAAGTTAACAGAAGAGTTTTGGAACTTTTGTTTAATCAAGATCCATA
TTGATGTAATGACATGAGCAATATAGCTTACAACTTTCATCCTCAACTCC
TTTATTGTGCTCCACACAATATATCATGAAACTATTCTCCAACAGATGAC
AAATTTGATTTAAATTCATTTGATTTTTAACTATTTGAGTACTGATGCAT
GTCAGTGAGTATGTGCATGTGAATGCAGGTACCGGGAGAGACCAGGATAC
ACCATCAGATCTCCTTGAGCTGAAGTTAGAGGAGATTGTGTGTCACTCTA
ATAAGTAACAATATGAGCTGTTAATCACCAAGACACATCTCCTCCTTAAT
CCCAAAACACTACAGTGTTTTTGAAATGAATGGCCTGCATAGGCTCATAT
ATTTGAATGA

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCCACAAAAGAAGATCAGGAGAGGGAG
CAGGAAGCCCGGGAGTGGAGCTGAGTAAATGCTCTCAGTCAGTCATTGTT
TGTGTGCTGAATTGAGTCAGGATAAAAGTTAATATTGTCTGGAAGAACTT
CCATAAAAGATAAATAACACAAAAACTTTCTTCTTCCTCCCCCTCTCCCT
CTCTTCTCCTCCCCCTCTCCTACTCCTTTTCCCCTCCTCCTCTTTTTCTT
CTTTATCTTCTTCTTCTTCTTCTAAGACTTTTCAGAAACATTGATCTTGG
CAACCCTTTGAAAGTGCCTCATTTGCATAGATGCAGTCATTGTCACTGAG
TGATTGCCTTTTGTTTGCATCACCCTCCTAACTATCTTGCATGATAGATA
AGAATGAAGAGCCTTAGAGACCATGACACTACAGCTCTGCTATGTGTTAT
GAGAGTATATAAATCAGCCCCTTCTGGGTCTACACAGTGAACATGAATAT
GTCAGGGATTATTCTTAGAGTTGCTATGCAATGAAACAAGAGTGTACCTA
TACTGCTGCATAGAATTGCTACAGTCCCATCACTAAATAACCAATATGTT
ATTCTTTTTCACACAACATGGTATATAGGGTATCCAAGGCATTATTTCTC
AGTCACAGCTCATCATCTTTCTTGAAGTGGAAGATGAAAAAAATCTTGTG
ATAGGAAGGCAATTTAACAAAAGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_l06.b1 MSMg01no507_l06.b1 CHROMAT_FILE:
MSMg01no507_l06.b1 PHD_FILE: MSMg01no507_l06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:20 2005
         (671 letters)



>mm_chr5_84676385_84677455
          Length = 1071

 Score = 1243 bits (643), Expect = 0.0
 Identities = 661/667 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttagcagatgtttcacattacataaataataatttagaaattcattgcaataat 64
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttagcagatgttaaacattacataaataataatttagaaattcattgcaataat 264

                                                                       
Query: 65  aattatgattgctatcccagtatacaggctcaatatttcctctgccaagttaaaatggac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aattatgattgctatcccagtatacaggctcaatatttcctctgccaagttaaaatggac 324

                                                                       
Query: 125 ttacattttaggatcctacaagtgtgaaactagaaatgaacttgaaggtacatgacatat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttacattttaggatcctacaagtgtgaaactagaaatgaacttgaaggtacatgacatat 384

                                                                       
Query: 185 aaacacacaaaagggtacaaataacactcagaaataactctgcacatcctttatatgtac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaacacacaaaagggtacaaataacactcagaaataactctgcacatcctttatatgtac 444

                                                                       
Query: 245 cataggaaaataatagtaactgcaaatagaacacgggctttaaaaaaacgtatctttaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cataggaaaataatagtaactgcaaatagaacacgggctttaaaaaaacgtatctttaga 504

                                                                       
Query: 305 tataagttaacagaagagttttggaacttttgtttaatcaagatccatattgatgtaatg 364
           |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 505 tataagttaacagaagagttttggaacttttgtttaatcaagttccatattgacgtaatg 564

                                                                       
Query: 365 acatgagcaatatagcttacaactttcatcctcaactcctttattgtgctccacacaata 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acatgagcaatatagcttacaactttcatcctcaactcctttattgtgctccacacaata 624

                                                                       
Query: 425 tatcatgaaactattctccaacagatgacaaatttgatttaaattcatttgatttttaac 484
           ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 625 tatcatgaaactattctccaacagatgacaactctgatttaaattcatttgatttttaac 684

                                                                       
Query: 485 tatttgagtactgatgcatgtcagtgagtatgtgcatgtgaatgcaggtaccgggagaga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tatttgagtactgatgcatgtcagtgagtatgtgcatgtgaatgcaggtaccgggagaga 744

                                                                       
Query: 545 ccaggatacaccatcagatctccttgagctgaagttagaggagattgtgtgtcactctaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ccaggatacaccatcagatctccttgagctgaagttagaggagattgtgtgtcactctaa 804

                                                                       
Query: 605 taagtaacaatatgagctgttaatcaccaagacacatctcctccttaatcccaaaacact 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 taagtaacaatatgagctgttaatcaccaagacacatctcctccttaatcccaaaacact 864

                  
Query: 665 acagtgt 671
           |||||||
Sbjct: 865 acagtgt 871


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space:   701321
Effective search space used:   701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no507_l06.g1 MSMg01no507_l06.g1 CHROMAT_FILE:
MSMg01no507_l06.g1 PHD_FILE: MSMg01no507_l06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:20 2005
         (396 letters)



>mm_chr5_84835914_84836709
          Length = 796

 Score =  735 bits (380), Expect = 0.0
 Identities = 392/396 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaaacattgatcttggcaaccctttgaaagtgcctcatttgcatagatgcagtcattgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 agaaacattgatcttggcaaccctttgaaagtgcctcatttgcatagatgcagtcattgt 537

                                                                       
Query: 61  cactgagtgattgccttttgtttgcatcaccctcctaactatcttgcatgatagataaga 120
           |||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||
Sbjct: 536 cactgagtgattgccttttgtttgcatcagtttcctaactatcttgcatgatagataaga 477

                                                                       
Query: 121 atgaagagccttagagaccatgacactacagctctgctatgtgttatgagagtatataaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 atgaagagccttagagaccatgacactacagctctgctatgtgttatgagagtatataaa 417

                                                                       
Query: 181 tcagccccttctgggtctacacagtgaacatgaatatgtcagggattattcttagagttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tcagccccttctgggtctacacagtgaacatgaatatgtcagggattattcttagagttg 357

                                                                       
Query: 241 ctatgcaatgaaacaagagtgtacctatactgctgcatagaattgctacagtcccatcac 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ctatgaaatgaaacaagagtgtacctatactgctgcatagaattgctacagtcccatcac 297

                                                                       
Query: 301 taaataaccaatatgttattctttttcacacaacatggtatatagggtatccaaggcatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 taaataaccaatatgttattctttttcacacaacatggtatatagggtatccaaggcatt 237

                                               
Query: 361 atttctcagtcacagctcatcatctttcttgaagtg 396
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 atttctcagtcacagctcatcatctttcttgaagtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 796
Length adjustment: 9
Effective length of query: 387
Effective length of database: 787
Effective search space:   304569
Effective search space used:   304569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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