Query= MSMg01no507_m04.b1 MSMg01no507_m04.b1 CHROMAT_FILE:
MSMg01no507_m04.b1 PHD_FILE: MSMg01no507_m04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:25 2005
(683 letters)
>mm_chr5_50397165_50398248
Length = 1084
Score = 1245 bits (644), Expect = 0.0
Identities = 674/684 (98%), Gaps = 1/684 (0%)
Strand = Plus / Plus
Query: 1 acttatgatttaaagaatccttactttctcaacaaatttctcacagcacccctgcctggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttatgatttaaagaatccttactttctcaacaaatttctcacagcacccctgcctggg 260
Query: 61 caatgtggaagtggctgttttactttaggaagatcccagccacactctaggcaggcagta 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caatgtggaagcggctgttttactttaggaagatcccagccacactctaggcaggcagta 320
Query: 121 ggcaagacagaggaaacgaggacactcagtaccacatcccggaaggggagcacacatgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 ggcaagacagaggaaacgaggacactcagtaccacatcccggaaggggagcacacatatt 380
Query: 181 atagagttcactctgaccaaccagccatggggttgacagctcagaggtatccttttacac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atagagttcactctgaccaaccagccatggggttgacagctcagaggtatccttttacac 440
Query: 241 tagtagtgtttgtgtagggatacaaaggggagacattgcattattcagaacaggaaatgg 300
||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagcagtgagtgggtagggatacaaaggggagacattgcattattcagaacaggaaatgg 500
Query: 301 tgaaagggcggtgattcctaaaagagaaataaaagtttagtagcacaaatggctagcaat 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 tgaaagggcggtgattcctaaaagagaaataaaagtttagtagcagaaatggctagcaat 560
Query: 361 taggtttagcactaaaagtttacattttcctcttaaaactttaaagaaaaagatttcaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taggtttagcactaaaagtttacattttcctcttaaaactttaaagaaaaagatttcaac 620
Query: 421 ttttagtgtttcccttttatattcagctttttcttccaaaactagatgaggagatagtta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttttagtgtttcccttttatattcagctttttcttccaaaactagatgaggagatagtta 680
Query: 481 actagtttaaaagggtgacaataataatcaggcgaaaggaatgtcctatttagggcattt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 actagtttaaaagggtgacaataataatcaggcgaaaggaatgtcctatttagggcattt 740
Query: 541 ttaaatggggaaagagaagcaatccacaaattctggctag-caccgcaagccccaaaggg 599
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 741 ttaaatggggaaagagaagcaatccacagattctggctaggcaccgcaagccccaaaggg 800
Query: 600 cagcgaacccaggagcactgtacctggcgatcaaggagcaattgtgaatcatgcttttct 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cagcgaacccaggagcactgtacctggcgatcaaggagcaattgtgaatcatgcttttct 860
Query: 660 ccacaaagatcccctgggactcat 683
||||||||||||| ||||||||||
Sbjct: 861 ccacaaagatcccttgggactcat 884
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1084
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1074
Effective search space: 722802
Effective search space used: 722802
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no507_m04.g1 MSMg01no507_m04.g1 CHROMAT_FILE:
MSMg01no507_m04.g1 PHD_FILE: MSMg01no507_m04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:25 2005
(391 letters)
>mm_chr5_50593286_50594076
Length = 791
Score = 741 bits (383), Expect = 0.0
Identities = 389/391 (99%)
Strand = Plus / Minus
Query: 1 aggttgaggcaagtaggcgcctagggggtaaaatgtaaagagccacagttcttccagcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 aggttgaggcaagtaggcgcctagggggtaaaatgtaaagagccacagttcttccagcac 578
Query: 61 taaataccggaagaaaaagaatgctcaagctcaaaggcctagctctagaggacaaactgg 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 577 taaataccggaagaaaaagaatgctcaagttcaaaggcctagctctagaggacaaactgg 518
Query: 121 ttttatttccagactgtttgtgacaatgagcaggtgtgttatatgccccaggactagact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ttttatttccagactgtttgtgacaatgagcaggtgtgttatatgccccaggactagact 458
Query: 181 gttgctaatctgcttaaatcccacagtgtttacacactgagagcatctttgattattaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gttgctaatctgcttaaatcccacagtgtttacacactgagagcatctttgattattaat 398
Query: 241 cccacatagagtcagagtttaagacttcaaaagggttttctgcacacagtaaatacagca 300
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 397 cccacatagagtcagagtttaagacttcaaacgggttttctgcacacagtaaatacagca 338
Query: 301 gtgtttctggaggcccacgatctggaaaggaaacattgaaagggtggaactggggcaaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gtgtttctggaggcccacgatctggaaaggaaacattgaaagggtggaactggggcaaat 278
Query: 361 acaatggaaaaccaggactgaaaaggaagaa 391
|||||||||||||||||||||||||||||||
Sbjct: 277 acaatggaaaaccaggactgaaaaggaagaa 247
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 791
Length adjustment: 9
Effective length of query: 382
Effective length of database: 782
Effective search space: 298724
Effective search space used: 298724
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
