GGTGTTTTTGCCNNCCCCCCTCTTTCCCCCTTCACCCTATAAATTTGGCG
GGCCGTCTATACGACTCACTATTGCGCGAGAGGATGCCGCGGGNAAATTC
TGGCCATGTCTGGGGGTTAAAGATTGCTCCCTGAAAAACTACACAGAGGG
ATAGCCCTATTAACTATTTTTGGGTTATAAAAAACAGGTCCACCAAAAAA
TTTCCCCCCTTTCCCAGGGAATTTTGGATTTCAGAAAAAAAAATTCCCGT
TTGGGCAAAACCTCCCTTTAAAGGGGGATTTTTTTCACAAAAAATTTATA
TGGGGGGGGGAAAAAATTTTTGGGGTTTGGGGGGGGCTTTTTTTGGGGGG
GCCCCCCCCCCCACCCCGCGGGTGGTGGTTTATACCCCCCCCCCCCCCGA
GGATGTGGTAAACCATTTTTTTTGTGTTTGCCCCCAACCCTTTTTCTCGG
GGGGGGGATATTTGGGTGTGGTTCATACAAACACGGTGNNCCTCTCCCTC
CGCGAGAGGGGGGGCCGTTTTTTATTTCCCTTTTGCGGGACAAAAAAAAA
AAAAAATATAGAGCATTTTTTCTTCTTTCCCGCGGCTGGGAAAAAATAAA
ACAAAATATATAAAATCACCACCTTCCCACCCAACCATAATTTTGTTGCG
GGGGGGGGGGGGGGGGGGGGCCCCCCACCCCCCCCCCCCCGCCACCCAGC
GTTGTGTTGGGGTGTAGGTTTTGGTTTTTTTTTTTATTATTTTTTATCNC
CCCATTACCTTTCTCTTCCCTTCTTTATGCTTGGCGGTTTTNNGCTTTNT
ATATAAGGAGGGAGAATAAATATAT

NNNNNNNNNAACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTTACCTGCAAA
AATATTGAGCAATTAAGCTAGCTAACAACGATACAGTCCCTGCATCGGGA
GAAAGCTCAGCTCCCATGGGAAGACCTTCCAGGGCACAGCCCCAAGGAAA
GAAAAGGCTAAAATATGGAAATAATTGTACAACTCAGTTTTATTCTAGAA
AAAGCTCGTGTTGCCAAAAGACTTTTTTCTTTTCTTTGATTTTCTTGGTC
TCAAGTTAAAAGGTGCTTTGTTTAGCATCGTTTTGTTTATAATGTAATAA
GGACATAAAGTTAAAAACAATTAAAATAAAAAAGAAATAGAGATAGAAAC
AACTCTTTAGCTAAATAAAGAGATCTGGGATGTGGCCACATATCTGGGTA
ACTGATACCCATAGTCCATACCTGGTTGAAGAGTCTATTATGTGAAAGGG
TAACCTCCACCTCAAGGGGACAATGCACTACGATCCAACTTTAAGGAGTT
TAAGGGATTAGCCACCTAACAGAGAAGGCATGACCACAGGAAGAAAGTAA
GGTAGCTAATGACATTCTACCCCTCCCCCCATGGATGGGAAACAGAGTGG
ATAATGAATGGAAATAGCCCAAGTAACCCAGACTTGTCTGCCACAACCCA
CTTTTTTCAGCTGGGTCCCAGGCGAGTCCCAAAAGGGCCCACGAGGGGCC
CAGGTGCC

Query= MSMg01no508_e18.g1 MSMg01no508_e18.g1 CHROMAT_FILE:
MSMg01no508_e18.g1 PHD_FILE: MSMg01no508_e18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:10 2005
         (474 letters)



>mm_chr5_39192141_39193017
          Length = 877

 Score =  884 bits (457), Expect = 0.0
 Identities = 471/477 (98%), Gaps = 3/477 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtttacctgcaaaaatattgagcaattaagctagctaacaacgatacagtccctgcatc 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 677 agtttacctgcaaaaatattgagcaattaagctagctaacaatgatacagtccctgcatc 618

                                                                       
Query: 61  gggagaaagctcagctcccatgggaagaccttccagggcacagccccaaggaaagaaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gggagaaagctcagctcccatgggaagaccttccagggcacagccccaaggaaagaaaag 558

                                                                       
Query: 121 gctaaaatatggaaataattgtacaactcagttttattctagaaaaagctcgtgttgcca 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 557 gctaaaatatggaaataattttacaactcagttttattctagaaaaagctcatgttgcca 498

                                                                       
Query: 181 aaagacttttttcttttctttgattttcttggtctcaagttaaaaggtgctttgtttagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aaagacttttttcttttctttgattttcttggtctcaagttaaaaggtgctttgtttagc 438

                                                                       
Query: 241 atcgttttgtttataatgtaataaggacataaagttaaaaacaattaaaat---aaaaaa 297
           |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||
Sbjct: 437 atcgttttgtttataatgtaataaggacataaagttaaaaacaattaaaataaaaaaaaa 378

                                                                       
Query: 298 gaaatagagatagaaacaactctttagctaaataaagagatctgggatgtggccacatat 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gaaatagagatagaaacaactctttagctaaataaagagatctgggatgtggccacatat 318

                                                                       
Query: 358 ctgggtaactgatacccatagtccatacctggttgaagagtctattatgtgaaagggtaa 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ctgggtaactgatacccatagtccatacctggttgaagagtctattatgtgaaagggtaa 258

                                                                    
Query: 418 cctccacctcaaggggacaatgcactacgatccaactttaaggagtttaagggatta 474
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 cctccacctcaaggggacaatgcactacgatccaactttaaggagtttaagggatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 877
Length adjustment: 10
Effective length of query: 464
Effective length of database: 867
Effective search space:   402288
Effective search space used:   402288
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)