NAATCGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCATGCTATACCTTATAGGATGTTAAGTACTTTCTCTTATAG
TTGAAAAAACTAGCATTCAATCAGTTATAAGTAGATATATATTGTTATAA
TTATGAATTATAAATTATTTATATTATAAATTATCAATTAAGATGAATAT
TTAAATTTATGCAATTAGATTGACAACTTCAACAAGTGTTAGGAAAAAAA
TCAGTCTTTAAATATATGGACTGTGACCTAGAGCGTTGGTAAGAGTGCTT
CCTACTCTTTTAGGGAACCCCTGTTCACTCTCCGGCATTAATATTAAGCA
CCTAGAAACCTCCTGGAACTGCAGTTCTGAAGAACACAATACCATCTTCT
GTCATTCATAGGCAGTAGTGCAAATGTGGTGCATTGCTAAAGTCAGTCAA
GTAAACATATAGAGAAAAGTGAACTAAAAAGAAAATTATTACTATTTGTG
CTAAACATTATGATAACCTAGAGAAATTATTCTAATGCTCCAATCAAAAT
TTTATTTTACTCTAACAAATACATGTATTAATCAATATTTTCTAATTAAT
TAACATTATCTAATTAACTGGTGTTAATTTGTTAGTAAGTTAATTAATAT
TTACTCACATTTCTTCTGAAATGCATCTCAAGTAAGAGTAATAAATACAT
AAAACATATGGAACAAGTAGAAGATCTGAAGTATATCAATAACATATGTC
TAATAACATAGACAGG

NCCCCGGTNNNCCCAACCANNNNNANCCCNNCCCCCCCTGTTTCCNAATT
TANNTGAACTATANAAGGTCCGCGGATTCTCGGGTGCGCACTACCAATGN
CANANAACACCTGAAAAAATGCTCAACATCCTTAATCATCANGGAAATGC
AAATCAAAACAACCCTGAAATTCCACCTCACACCANTCAAAATGGCTAAA
ATCAAAAATCANGTGACANCAAATGCTNNGCTGNATGTGNAAAAAGAAGA
ACACTCCTCCATTGTTTGNNGGAATTGCAGGCTTTGTACAACCCCTCTGG
AAATCAATCTTGGGGTTCCTCCAAAACTTGGAAATTNTCCTTCCCGAAAG
AACCCCCAAACCCTCTCTCGGGGTTTTTTCCAAAAAAACCCCCCCCCTGT
AAAAAAAAAAACATGCGCCCCCCATTTTTTTTAANCCCCCCTTTTTTTTA
TAAACCCCAAAAATTTAAAAAAAACCCAAAAACCCCCCTCTCCTAAAAAA
AAGGGGTCCCAAAAAAAAGGGGGGCCCCCTTCCCCCCCGGGGGAAAACCT
CCTCCCCCTTTTTTAAAAAAAAATAAATTTTTTAAAAACTCTCTCCCCCC
CCCAGAGAGATTACTCCTCCGGGGGGGCCTTTTCCCTTGTTTNGAAGGGA
AAAAAAATTTTTTTTTTG

Query= MSMg01no508_f04.b1 MSMg01no508_f04.b1 CHROMAT_FILE:
MSMg01no508_f04.b1 PHD_FILE: MSMg01no508_f04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:12 2005
         (705 letters)



>mm_chr5_82910840_82911944
          Length = 1105

 Score = 1237 bits (640), Expect = 0.0
 Identities = 682/702 (97%), Gaps = 10/702 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccatgctataccttataggatgttaagtactttctcttatagttgaaaaaacta 63
           ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 875 ggaattccatgctctaccttataggatgttaactactttctcttatagttgaaaaaacta 816

                                                                       
Query: 64  gcattcaatcagttataagtagatatatattgttataattatgaattataaattatttat 123
           ||||||||||          ||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 gcattcaatc----------agatatatattgttataattatgaattataaattatttat 766

                                                                       
Query: 124 attataaattatcaattaagatgaatatttaaatttatgcaattagattgacaacttcaa 183
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 attataaattatcaattaaaatgaatatttaaatttatgcaattagattgacaacttcaa 706

                                                                       
Query: 184 caagtgttaggaaaaaaatcagtctttaaatatatggactgtgacctagagcgttggtaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 caagtgttaggaaaaaaatcagtctttaaatatatggactgtgacctagagcgttggtaa 646

                                                                       
Query: 244 gagtgcttcctactcttttagggaacccctgttcactctccggcattaatattaagcacc 303
           |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 645 gagtgcttcctactcttttaggaaacccctgttcactttccggcattaatattaagcacc 586

                                                                       
Query: 304 tagaaacctcctggaactgcagttctgaagaacacaataccatcttctgtcattcatagg 363
           ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 585 tagcaacctcctggaactgcagttctgaagaacacaataccaccttctgtcattcatagg 526

                                                                       
Query: 364 cagtagtgcaaatgtggtgcattgctaaagtcagtcaagtaaacatatagagaaaagtga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 525 cagtagtgcaaatgtggtgcattgctaaagtcagtcaagtaaacatatacagaaaagtga 466

                                                                       
Query: 424 actaaaaagaaaattattactatttgtgctaaacattatgataacctagagaaattattc 483
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 465 actaaaaagaaaattattactatttgtgctagacattatgataacctagagaaattattc 406

                                                                       
Query: 484 taatgctccaatcaaaattttattttactctaacaaatacatgtattaatcaatattttc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 taatgctccaatcaaaattttattttactctaacaaatacatgtattaatcaatattttc 346

                                                                       
Query: 544 taattaattaacattatctaattaactggtgttaatttgttagtaagttaattaatattt 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 taattaattaacattatctaattaactggtgttaatttgttagtaagttaattaatattt 286

                                                                       
Query: 604 actcacatttcttctgaaatgcatctcaagtaagagtaataaatacataaaacatatgga 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 actcacatttcttctgaaatgcatctcaagtaagagtaataaatacataaaacatatgga 226

                                                     
Query: 664 acaagtagaagatctgaagtatatcaataacatatgtctaat 705
           ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 225 acaggtagaagatctgaagtatatcaataacatatgtctaat 184


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 705
Length of database: 1105
Length adjustment: 10
Effective length of query: 695
Effective length of database: 1095
Effective search space:   761025
Effective search space used:   761025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)