BAC Information

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BAC

Clone NameMSMg01-508G11
Chromosome5 (Build37)
Map Location 22,364,061 - 22,364,447
singlet/doubletsinglet
Overlap geneLhfpl3
Upstream geneSlc26a5, Reln, Dnaja1-ps, LOC100041982, Orc5l, LOC100042049, LOC668232, LOC100042067, LOC671222, LOC625174
Downstream geneEG625219, LOC100042101, LOC100042082, 4930580E04Rik, BC050254, Srpk2, Pus7, Rint1, 4933427G23Rik, Tomm7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-508G11.T7 (MSMg01no508_g11.b1)MSMg01-508G11.TJ (MSMg01no508_g11.g1)
ACCAG582325AG582326
length747747
length of high quality
(start - end)
387 (330 - 716)327 (329 - 655)
definitionCHROMAT_FILE: MSMg01no508_g11.b1 PHD_FILE: MSMg01no508_g11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:37:18 2005CHROMAT_FILE: MSMg01no508_g11.g1 PHD_FILE: MSMg01no508_g11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:37:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGC
CGCGGAATTCTTTAAGTGCTTTTTAGAAGATCAGAAAACACTACAATGGC
AGGCACAATATTAAAGCCTGTGACTAATTCAGTTTTGATCTTGACTGAAG
CCTTTATCCAGTTTTGCACCGCTTTTTTCTACCCTATTATATGACCAAAG
AGAAGACTATTTATCGGAAGAAATGGGTGCTATCTCTGAAAGTTGTGATA
AGTTACATTATTCCTATTTAAAACGAAAAAGTTATAACTATTCTTTGTCA
GTGTCATGAGAGGGGCTTAAAACTTTTTACTTGTTGGTCAACTAAAACAC
GTGAGGATGCCAAATGCTGTCCCCAGAGAACCAGAGAGATTCCTTGTAGG
TTGGTGCTGCCAGTGGTCTTCACCTCTGCTGACATCCCTTAGGGGTTTGT
TTGCTTGTCTGCTTTGAGCTGTATTAAGCTCTTAATAGTGTTTAGCAGAA
GTGGCTACTTCTTATTCTGAGACAGGTATTACACCAACGGCAGATGTTCC
TTACATTTTGACCTCTGTGTTCCCCAAAGAGATTCTTTCCCAAGCTTCCC
ATATTAGACATTTAACTATTTGAATTATCTATTANAATATTATTTTATAT
ATTGTGAATCTCTGTATCCATTGATTTAACTATATATAAAAAACTATTTA
TCTGAAAGCAAATGACCAGGATTTATATATTTTTTTTTACTGGTTAG
TTCTCGATTATAGTGAGAGGCCTGGNGGNCGCCTGTTTCAAAAATTGGGG
TGAACTATAGAAGTAACGAAAAATGCGTTCCTTAGATACTCTCTCCCCAG
AGGAATCAGTTTTGGTTTTCTAGAGTATCCCCAGTGAAAATGGAAAAATG
AGGACTGTCGAGTGAGAGACATATTAGAATGCAATCATTCCTTACAGTTC
TTCAGTTGGCTGAGTTGTCTCTAATAACAAAGCCAGTTCATTCATGTACC
TCTGTATGTGCGATCCTAAGTCTCCTTATGCGTGTACTAAGCAATAAGGA
AAACACAAACTAATGGAATTCAGTAATAAAAATTTTAGGAATGTAAACAG
AAACTACAGAGGCAAGCTGCACCAATAGAATACAAAAGATGGAAGAAAGA
CTCTCAGGCATTGAAGATATGATAGAAAAAAATCAATACATTGGTCAAAG
GAAATATTAAATCTAAGAAATCCCCTAAAACAAAACATTCAGGAAATATT
GGACACTGTGAAAAGACCAAATCTAAGAATAATCGAAGAATAGAGAAGAT
ACCAAGTTCAAAGGACCAGAGAATATTTTCAACAAAGTCATAGAAAAAAA
TTTCCTAACCTAAAGAAGGGCATGGCTATCGAGGTATAAGAAGCTTACAG
AGCACCAAATGGATTGGTCCTGAAAAGAAAATACTCTCACCACATAATAA
CAAAATGCTAAACATACAGAGCAAAGAAGATATTTAAAGCTGCAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no508_g11.b1 MSMg01no508_g11.b1 CHROMAT_FILE:
MSMg01no508_g11.b1 PHD_FILE: MSMg01no508_g11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:18 2005
         (387 letters)



>mm_chr5_22363861_22364647
          Length = 787

 Score =  743 bits (384), Expect = 0.0
 Identities = 386/387 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgttggtcaactaaaacacgtgaggatgccaaatgctgtccccagagaaccagagaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttgttggtcaactaaaacacgtgaggatgccaaatgctgtccccagagaaccagagaga 260

                                                                       
Query: 61  ttccttgtaggttggtgctgccagtggtcttcacctctgctgacatcccttaggggtttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttccttgtaggttggtgctgccagtggtcttcacctctgctgacatcccttaggggtttg 320

                                                                       
Query: 121 tttgcttgtctgctttgagctgtattaagctcttaatagtgtttagcagaagtggctact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgcttgtctgctttgagctgtattaagctcttaatagtgtttagcagaagtggctact 380

                                                                       
Query: 181 tcttattctgagacaggtattacaccaacggcagatgttccttacattttgacctctgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttattctgagacaggtattacaccaacggcagatgttccttacattttgacctctgtg 440

                                                                       
Query: 241 ttccccaaagagattctttcccaagcttcccatattagacatttaactatttgaattatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttccccaaagagattctttcccaagcttcccatattagacatttaactatttgaattatc 500

                                                                       
Query: 301 tattanaatattattttatatattgtgaatctctgtatccattgatttaactatatataa 360
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tattaaaatattattttatatattgtgaatctctgtatccattgatttaactatatataa 560

                                      
Query: 361 aaaactatttatctgaaagcaaatgac 387
           |||||||||||||||||||||||||||
Sbjct: 561 aaaactatttatctgaaagcaaatgac 587


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space:   294084
Effective search space used:   294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)