Query= MSMg01no508_m09.b1 MSMg01no508_m09.b1 CHROMAT_FILE:
MSMg01no508_m09.b1 PHD_FILE: MSMg01no508_m09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:48 2005
(325 letters)
>mm_chr5_133646272_133646996
Length = 725
Score = 590 bits (305), Expect = e-173
Identities = 320/325 (98%)
Strand = Plus / Minus
Query: 1 catgtatacatgcatatatatatgagtcaaaagtagaacaagtttaatagcctctactct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 525 catgtatacatgcatatatatatgagtcaaaagtagaacaagtttaatagcctctgctct 466
Query: 61 agagcccctgcctaaaacagctgcgtcccccctagtattgtaaagaccacataacagtct 120
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 465 agagcccctgcctaaaacagctgcgtttctcctagtattgtaaagaccacataacagtct 406
Query: 121 tttctgaattacacactcctctaggaaaaaggaggaaggattctgggattcaggaaataa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tttctgaattacacactcctctaggaaaaaggaggaaggattctgggattcaggaaataa 346
Query: 181 ataaacttcacatgtctgcagaagctgagccatctaagatgcaccaggtccctttccctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ataaacttcacatgtctgcagaagctgagccatctaagatgcaccaggtccctttccctg 286
Query: 241 tttgaggagactctgatcagataagctgcagcataaagagaaaaccatcggcacggaatg 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tttgaagagactctgatcagataagctgcagcataaagagaaaaccatcggcacggaatg 226
Query: 301 gtggagctgcctgcaggctatgcag 325
|||||||||||||||||||||||||
Sbjct: 225 gtggagctgcctgcaggctatgcag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space: 226256
Effective search space used: 226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no508_m09.g1 MSMg01no508_m09.g1 CHROMAT_FILE:
MSMg01no508_m09.g1 PHD_FILE: MSMg01no508_m09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:48 2005
(259 letters)
>mm_chr5_133465883_133466539
Length = 657
Score = 412 bits (213), Expect = e-119
Identities = 244/255 (95%), Gaps = 2/255 (0%)
Strand = Plus / Plus
Query: 1 ataaaaaggaagagaccacatgagtaaccatggggagaatgaaacacacccagtactagt 60
||||||||||||||||||||||||||||||||||| |||||||| | | ||||||||| |
Sbjct: 201 ataaaaaggaagagaccacatgagtaaccatggggggaatgaaagagagccagtactaat 260
Query: 61 gtgtgtgtcagcctaaattttggcaggcaaccatctttattggttaagctcaagctccct 120
|||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 261 gtgtgt--cagcctaaattttggcaggcaaccatctttattggttaagcccaagttccct 318
Query: 121 tggaactcactatgtagaccaggctggccctgacctcactaaaatatttgcttctgtctc 180
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 319 tggaactcactacgtagaccaggctggccctgacttcactaaaatatttgcttctgtctc 378
Query: 181 ctgagtgttgggattaaagggatgcaccaccatacccagctaattgttttaaaatgattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ctgagtgttgggattaaagggatgcaccaccatacccagctaattgttttaaaatgattt 438
Query: 241 atttgtgtgtgtgtg 255
|||||||||||||||
Sbjct: 439 atttgtgtgtgtgtg 453
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 657
Length adjustment: 9
Effective length of query: 250
Effective length of database: 648
Effective search space: 162000
Effective search space used: 162000
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
