BAC Information

Click to search

BAC

Clone NameMSMg01-508O04
Chromosome5 (Build37)
Map Location 26,438,940 - 26,439,306
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100038949, EG272714, EG545739, Speer4a, EG664804, LOC619645, LOC100039045, 5031410I06Rik
Downstream geneLOC434689, LOC664837, 4930584F24Rik, Dpp6, B930011P16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-508O04.T7 (MSMg01no508_o04.b1)MSMg01-508O04.TJ (MSMg01no508_o04.g1)
ACCAG582693AG582694
length757781
length of high quality
(start - end)
509 (75 - 583)369 (78 - 446)
definitionCHROMAT_FILE: MSMg01no508_o04.b1 PHD_FILE: MSMg01no508_o04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:37:57 2005CHROMAT_FILE: MSMg01no508_o04.g1 PHD_FILE: MSMg01no508_o04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:37:57 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
AAACCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCATACGTCNCACAATAGTACTCTGTAACACACGTCCATTCA
TGACTCTGTAGCCAAATATTGAGTTATATTTATAACTCAATTTATTTATT
TATAAAATGAATCAGGAAGGCAAGAGTCACGTGCCTCAGTTTTGCTTGCA
ATATAGCATCAGTGATAACCACACACCAGATATGCTAACCTTCAAAGTCA
CTCTGGGAAATAGCTTTGATAGATGCGGTTGTCCTTGACCATACACTTGC
TGTGTTTTGTTGTTGCTAATTAGGAAGGACATTTGAAGCTCCCCTTATGC
CATAGCAGATATAAGAGTATATTGTGGAAGTACTTGTTGGGTGAGTTTTA
CTGAATGGAACTGACTCTGCCTGGGGATCAATCAGAGAGTTAATGTGTGA
ATGAATTAATCCTGTGCTTCCACAAAGAGTTGCTGGAAAGGCAGGATTTT
TAAAAGTTCAGCACCTACACAAGCAGGGTAGAGGTTTGATTATACACTGG
CACATGTCCTCTGGGTTTTATGAACTGATTCAGCCAGAGAAAGGGTCATC
CGCAACACAGTGGAAAGTGGGTGAAACTTGATTTAGCCCACACTGCCAAG
ATACTACTATAGTGGGTGGTTCTCCTTCTCCATCTTAGAACTGTAAGGGG
CCTGGGTTTTGCAAAGCCTACTCAAGTATGGGTCCTCACAACATTGTGTG
GTTTGTT
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATAACAGCAAGGATACAGTATGG
TGGTGAATACATCTTAGTGTGTACATGGGGTAAGCCACATGATTCACATA
CAAGAGACCATCGCCTCGTGTATCCATAGGTGGCTATGACTTCACACATA
TACAGAAAAGGATAGCTGGGTCTGGGTTTAGTCAGAGAAGATGCAACTGA
CCCTAAAGAGACCGAGGTCTCTGGAAGTTCAGAGGTCTGGTGGGGTGGGT
TTGGGGATCCCCGTATACAGAGGAGGGGCAGGGGAGAGGTATGGGATGTG
GAAGAGACAGAGGGCAGATCTGGAGTTTAAAAAAACATAAATAAAACAAA
AGTATAAAAGTGTTATTTTTCCCGCGTTTCAGCCTTGCTTTTCTCTCTAA
GCAGAGTAAGTTTGTCACCTTTCTGGATAGATAGAATTAATAGGAGCTAG
AAAGTTGAAAGCAAAGATGGCTATTATACCATCATGGGTTCAGAACGTCA
CCAAATCATGGACAGGTTGAGGCAGTGGGTTGTGGGAGTCAGCTTAAAGC
CACTATCTCCCTATTTGTATGCTTTGACATGTCAGGATTCCCTGGGAATT
ACTTAGTTCCTCTCTCATCTTACAACATTTAAGACTTGTTTTTTGTTTGG
GCATAGGCCATTATTTATTTTATGTGGTCTTCTTCGACGGTCCCGCCGAT
GTATTGTTTCTGGCACCTATTCTTTGTTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no508_o04.g1 MSMg01no508_o04.g1 CHROMAT_FILE:
MSMg01no508_o04.g1 PHD_FILE: MSMg01no508_o04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:57 2005
         (369 letters)



>mm_chr5_26438737_26439505
          Length = 769

 Score =  632 bits (327), Expect = 0.0
 Identities = 357/367 (97%), Gaps = 1/367 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   acagcaaggatacagtatggtggtgaatacatcttagtgtgtacatggggtaagccacat 63
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 acagcatggatacagtatggtggtgaatacatcttagtgtgtacatggggtaagccacat 263

                                                                       
Query: 64  gattcacatacaagagaccatcgcctcgtgtatccataggtggctatgacttcacacata 123
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gattcacacacaagagaccatcgcctcgtgtatccataggtggctatgacttcacacata 323

                                                                       
Query: 124 tacagaaaaggatagctgggtctgggtttagtcagagaagatgcaactgaccctaaagag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tacagaaaaggatagctgggtctgggtttagtcagagaagatgcaactgaccctaaagag 383

                                                                       
Query: 184 accgaggtctctggaagttcagaggtctggtggggtgggtttggggatccccgtatacag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 384 accgaggtctctggaagttcagaggtctggtggggtgggtttggggatccccgtggacag 443

                                                                       
Query: 244 aggaggggcaggggagaggtatgggatgtggaagagacagagggcagatctggagtttaa 303
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aggaggggcaggtgagaggtatgggatgtggaagagacagagggcagatctggagtttaa 503

                                                                       
Query: 304 aaaaa-cataaataaaacaaaagtataaaagtgttatttttcccgcgtttcagccttgct 362
           ||||| ||||||||||||||||| ||||||||||||||||||  | ||||||||||||||
Sbjct: 504 aaaaaacataaataaaacaaaagcataaaagtgttatttttcttgtgtttcagccttgct 563

                  
Query: 363 tttctct 369
           |||||||
Sbjct: 564 tttctct 570


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)