Query= MSMg01no509_i01.b1 MSMg01no509_i01.b1 CHROMAT_FILE:
MSMg01no509_i01.b1 PHD_FILE: MSMg01no509_i01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:45 2005
(638 letters)
>mm_chr5_58337708_58338745
Length = 1038
Score = 1123 bits (581), Expect = 0.0
Identities = 606/627 (96%), Gaps = 20/627 (3%)
Strand = Plus / Minus
Query: 12 ctatacagatcagttttcaatgagcatttttaaaagcaagtactatattatataattcca 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1038 ctatacagatcagttttcaatgagcatttttaaaagcaagtactatattatataattcca 979
Query: 72 tggagagacattttctcatgtggtcatgcagtcatttgtttctagaatgaagagacaaca 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 978 tggagagacattttctcatgtggtcatgcagtcatttgtttctagaatgaagagacaaca 919
Query: 132 aagtttgagatcactctctcatctgtctctactatagtgtctgtgcacgcacacacacac 191
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918 aagtttgagatcactctctcatctgtctctactatagtgtctgtgcacg----------- 870
Query: 192 acacacacacacacacacacacacacacacacacacacacgagttccattggatgtccat 251
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 ---------cacacacacacacacacacacacacacacacgagttccattggatgtccat 819
Query: 252 taaccaaaatctatttcactctcttcaaaagaatagactctatttctggtggagacaaag 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 taaccaaaatctatttcactctcttcaaaagaatagactctatttctggtggagacaaag 759
Query: 312 gatagtttccttcgataagtgttaatcgactgcagctagtcaattcccgtgccaaaggga 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 gatagtttccttcgataagtgttaatcgactgcagctagtcaattcccgtgccaaaggga 699
Query: 372 ccaaccctcagaattctcatttgctataagccacattaaagatatttacctggaaattta 431
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 ccaaccttcagaattctcatttgctataagccacattaaagatatttacctggaaattta 639
Query: 432 tttacttagaaaaaccagtttatcttcccagaattccttgctctctgggcagttgttaca 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tttacttagaaaaaccagtttatcttcccagaattccttgctctctgggcagttgttaca 579
Query: 492 tctctccacaggtttctgttaggtgtaccaacatttctgggtcctaaagcagaaactcct 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 tctctccacaggtttctgttaggtgtaccaacatttctgggtcctaaagcagaaactcct 519
Query: 552 atttctttcctttcttttctctttgactctttatttctacatttgtccagagtttaaggt 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 atttctttcctttcttttctctttgactctttatttctacatttgtccagagtttaaggt 459
Query: 612 ttttttttttcgttctttctttcttaa 638
|||||||||||||||||||||||||||
Sbjct: 458 ttttttttttcgttctttctttcttaa 432
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 72
Number of extensions: 14
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space: 645584
Effective search space used: 645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no509_i01.g1 MSMg01no509_i01.g1 CHROMAT_FILE:
MSMg01no509_i01.g1 PHD_FILE: MSMg01no509_i01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:45 2005
(597 letters)
>mm_chr5_58185273_58186269
Length = 997
Score = 1085 bits (561), Expect = 0.0
Identities = 588/597 (98%)
Strand = Plus / Plus
Query: 1 ttttagattaaaaagatatagctctctctcactgttttcagagtaaacatgaaagtcagg 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 ttttagattaaaaagatatagctctctctcactgttttcagagcaaacatgaaagtcagg 260
Query: 61 tatgaagataatcagatatttgagtgtctaatgtgattctcaagattctattaagagcca 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 tatgaagataatcagatatttgagtgcctaatgtgattctcaagattctattaagagcca 320
Query: 121 ttgacatgatttacaaagggtagcgtcatggagagtctgtcagagttccctctgcttttg 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 ttgacatgatttacaaagggtagcgtcatggaaagtctgtcagagttccctctgcttttg 380
Query: 181 gatggcttgaaggaagaatgtgacttagaaataatctaccatttgcgtgacataaaaggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatggcttgaaggaagaatgtgacttagaaataatctaccatttgcgtgacataaaaggg 440
Query: 241 tctctcatccctcttcactccctcttcagatggtgtgcatttgtctccattacatgcaat 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctctcattcctcttcactccctcttcagatggtgtgcatttgtctccattacatgcaat 500
Query: 301 ggagctacctagcaaccctgacagtcacctaccagaagagtggctctagcttttcacagg 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 ggagctacctagcaaccctgacagtcatctaccagaagagtggctctagcttttcacagg 560
Query: 361 agacagtggccttggtagtttttctctggagctgtgaaacaagaaaaatttaagggaagg 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 agacagtggccttggtagtttttctctggagctgtgaaacaggaaaaatttaagggaagg 620
Query: 421 cttactctgcttgtgattgaaatcgtgcaaaggaatgaaatatttcatcatgtgacttta 480
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 621 cttactctgcttgtgattgaaatcatgcaaaggaatgaaatatttcatcatgtgacttta 680
Query: 481 cctttatattaatgaaactcattgtataggcaactatttgtttttaggaggttgtattta 540
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctttatattaatgaaactcattctataggcaactatttgtttttaggaggttgtattta 740
Query: 541 ttgtttgtaaaactatatcaggaagaagttacttaagggttatatttttcccttatc 597
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 741 ttgtttgtaaaactatatcaggaagaagttacttaaggtttatatttttcccttatc 797
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space: 579369
Effective search space used: 579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
