BAC Information

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BAC

Clone NameMSMg01-509N08
Chromosome5 (Build37)
Map Location 104,930,041 - 104,930,369
singlet/doubletsinglet
Overlap genePkd2
Upstream genePtpn13, Slc10a6, 1700016H13Rik, Aff1, Klhl8, Hsd17b13, EG666629, Hsd17b11, Nudt9, Sparcl1, LOC100041136, Dspp, Dmp1, LOC100041145, Ibsp, Mepe, Spp1
Downstream geneBC005561, LOC100042165, LOC100041172, D930016D06Rik, 2310012P17Rik, LOC640963, LOC100041199, LOC666726, C230055K05Rik, LOC100041216, Abcg3, LOC626471, EG545790, 5830443L24Rik, BC057170, Gbp4, LOC675363, LOC626578, Mpa2l, EG634650, Lrrc8b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509N08.T7 (MSMg01no509_n08.b1)MSMg01-509N08.TJ (MSMg01no509_n08.g1)
ACCAG583414AG583415
length753758
length of high quality
(start - end)
427 (327 - 753)329 (326 - 654)
definitionCHROMAT_FILE: MSMg01no509_n08.b1 PHD_FILE: MSMg01no509_n08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:12 2005CHROMAT_FILE: MSMg01no509_n08.g1 PHD_FILE: MSMg01no509_n08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NACTCATXXXXXXXXXXXXXXXXXXXXXXXXXAATCCAAACAGGATCCGC
GGAATTCTTCCCTGCACATACTGGAGACAACACACTCAAAGGTAATGTCA
AAGTTAATTCAGGATATTTACTGTTGCTTCCATTTACAAACACATAGTTA
AAACACATTATCAAGCATTTCCTGTTATTTAATTGACAGTAGTCCCAATA
TGATTACAATTTTGTTATACATCATGCCAATCCATCAATTGTCTTGAATC
TGGTATTTTAGTTTATTTCAAAAACAATAAAAATCGGAATAGCTGCAACA
TCTACTCAAAAGCATACTGTTATTTTTCTTAATAAGCTTGGCAAGTTCTC
AGAGCAACACTGTGATCCAACTATGTAGACACAACAATGTTGTTCATTTC
TAAATCTATAATGCTGCTCTCTACAAAGGGGAAAAGTATTTTGCTTATTC
TGTAGACACTCATGTACAAGAACAGAAGCAATGAATTATAGACCTGGGCC
CAGAGGAGGACAAGAACTTCATTCAGCCAGGAGACAGTGAATTCCTGTCT
GCTCCTATACAAAGTCTGAAGTGACTATGTGTCAAGTTGACAATAAGGTA
CCCAGCACAAACCCTACACAATTATAAACTATGTATTGTATCACCCATAC
ATAGCGCCAGATCCACAGTTGAATTCCTGTAAAGTATAGGATATTTAGAG
TTTATTCTCCATGGCCTCTCTAAAAGCGACCATTTACCAGAAGGGTTTCA
TTG
CACGATGCAGNGGGAGGCCNGGNGGTCGCCCGTGAGCATTGGGTAGGNGA
ACNANAGAAGTATCAGCACTAGGCTCTCCAGNTNCCTTTACTTGACTCTA
TTTTATTTCCTTCTTATTTCCTTTGTTGTATCTGATGAGAATGTAGCTCA
ATGTGATTCTTTGAACATTGTAGATCAGGGTTTTCTTGGTGCTTTCATTT
TTTTTCTTTTCTCTTTGTATACCTTCACCGTGTATCCAGATGTGCCTTTT
TTATTTTTATGAGTATCTTGAATTTGTAGTATTTCTTAGCAAACCTGTTG
AAAACATTACTTGATGTAATATTTTAGCATTTTNAAATGCCACAAGNTCT
TACTTTTCTTTACTGGTCTTTTTAATAAATGATTTTTGTCTGTCATGTGA
TCTTAAGAACACCCCCATACCTTTAAAAGGATTGAGGTTTTAAGAGTAGT
TTTGAGGGGGCTGGAGAGATGGCTCGGCAGTTAAGAGCACTGACTGCTCT
TCCCGAGGTCCTGAGTTCAATTTCCAGCAACCACATGGTAGCTCACAACC
ATCTGTAATGGGATCTGATACCCTCTTCTGGTGTGTCTGAAGACAGCTAC
AATGTTGTACTCACATACATGAAATAAATAAATAAATCTTTTTTTTAAAA
TCCTAAAATTGTGCGGTCCATAATGAAAAAGAGGCAGAGAAGCCAGTTTA
AAAAATAATAATACGAAAGTAGTTTTGAACAGCTATCCCTATACTGTCAA
TTGAGAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_n08.g1 MSMg01no509_n08.g1 CHROMAT_FILE:
MSMg01no509_n08.g1 PHD_FILE: MSMg01no509_n08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:12 2005
         (329 letters)



>mm_chr5_104929841_104930569
          Length = 729

 Score =  518 bits (268), Expect = e-151
 Identities = 314/330 (95%), Gaps = 2/330 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcattttnaaatgccacaagntcttacttttctttactggtctttttaataaatgattt 60
           |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcatttttaaatgccacaagttcttacttttctttactggtctttttaataaatgattt 260

                                                                       
Query: 61  ttgtctgtcatgtgatct-taagaacacccccatacctttaaaaggattgaggttttaag 119
           || ||||||||||||| | |||||| |   | ||||||||||||||||||||||||||||
Sbjct: 261 ttatctgtcatgtgat-tgtaagaaaatttctatacctttaaaaggattgaggttttaag 319

                                                                       
Query: 120 agtagttttgagggggctggagagatggctcggcagttaagagcactgactgctcttccc 179
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agtagttttgagtgggctggagagatggctcggcagttaagagcactgactgctcttccc 379

                                                                       
Query: 180 gaggtcctgagttcaatttccagcaaccacatggtagctcacaaccatctgtaatgggat 239
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 380 gaggtcctgagttcaatttccagcaaccacatggtggctcacaaccatctgtaatgggat 439

                                                                       
Query: 240 ctgataccctcttctggtgtgtctgaagacagctacaatgttgtactcacatacatgaaa 299
           | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ccgatgccctcttctggtgtgtctgaagacagctacaatgttgtactcacatacatgaaa 499

                                         
Query: 300 taaataaataaatcttttttttaaaatcct 329
           ||||| ||||||||||||||| ||||||||
Sbjct: 500 taaatgaataaatctttttttaaaaatcct 529


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)