BAC Information

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BAC

Clone NameMSMg01-509O18
Chromosome5 (Build37)
Map Location 15,196,312 - 15,196,502
singlet/doubletsinglet
Overlap geneSpeer7-ps1
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik
Downstream gene4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509O18.T7 (MSMg01no509_o18.b1)MSMg01-509O18.TJ (MSMg01no509_o18.g1)
ACCAG583482AG583483
length723805
length of high quality
(start - end)
73 (292 - 364)195 (121 - 315)
definitionCHROMAT_FILE: MSMg01no509_o18.b1 PHD_FILE: MSMg01no509_o18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:20 2005CHROMAT_FILE: MSMg01no509_o18.g1 PHD_FILE: MSMg01no509_o18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:20 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
AAAATTGCGGCGCAAAAGATCACATTCAAAACGGGGGGGAANCCACCGTT
CCTAAAAGGGGATGAAGACTCAGCAAGTGGCTGGATAAAAATTAACTTTA
CAATCAGTAGCCTTCCTCTACTTAAGACAATAGCTGAGAAAAAATACGGA
CATGACAGCCTTCCAATAGTCACAATAAATTAGATACCTTGGTGGACTCG
AACAAGCAAGTGAAAGATCTGTATGACAGAATTCAAGTCTCTGAGAAAGA
AATTAACAGAAGTGGAAAGATCCCCATGCTCTTTTCTTTCAGGATGAAAT
AATAAAATTGGCATCTTGTCTTAAGAATCTACAGATTCAATGCAATCCCC
ATTAAAATTCCTACTCAATTCTTCCCCCAATTAGAAACAGCAATTTGTAA
ATTCATCTGGAATAACAAAAAATCTAGGAAAGCAAAAACTATTCTCAACA
AAAGAACTTCTGGGGAAATCATCATTTCTAACCTCAAGCTGTATTACAGA
GTAATAGTGATAAAAACTTTATGGTATTGGTACAGAGAGAGGCTGGATAG
ATCAGCGGAATAGAATTGAAGACCCTTAAATGATATTACACACCTCTGGT
CACTTGATCTTTGACTAATGATGCTATACCATTCAGTTGGAAAAAAGACA
GCATTTTCATCAAATGGCGCTGGCTCTATTGGCAGTTATCATGTATAAGA
AGGCATATGTGACCATTTCTTAT
CATGAAGTGGGAGTCCGGGNGGNCTCCTGGTTCTTACCTGAGGTGAACNA
NAGAAGGTACGACCACGGGGGGAGGNNCTTTCTCTAGATCCAGAACAGGC
ACAAATGCTGTCTATTCATTAGATGCTCTTCTTGAAACTATGGATAATTA
AAATATCAGTTCAGTTAACTTGTGGAGAAAAAGAACTCAGAACTTGGCTA
TAGATGTTATAACTTACTTGGAATGTATGTGTGCATGTGCATTGTGTTTT
AGAGTATGGGTGAGTGAGTGTTGCTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTTCGCGTGCATTTAAAACACCCCCAACAAAACCCCAACAA
ATTTTTTTCCCCCCCCCCAAATATGCGATTTTATCGCTTCCCTTTTTTTA
TTTATTGCCCCGCCTCCCCCCTTTTTTTTGATGGGATCCTTGCATACCTA
TTACTTCCTTACCCCACAAATACAACCCTTATTACCCGCCTCCCCATTCC
TCCTTCCCTTCACCTCCATTTCTTTTTCCCGATACTCTTTCCCCCTCCAT
TCTCTCTCCCCTCTTTCTCCCGTTTTAATTCTCTTTTCCCTCCCCCTCCC
CCCTCTCAACCTCTACATTCTTTTCTCTTCCCTTCCTTCCCGAACTAATT
CATTTCCCAACCCACCACGCTTTTTTTTTTTTTTCTCCTTTTTCCGCTCT
CCATTTCTCTCACCTTCCTCCCACTTTTTTTCCTCGCCTATTTCCCCTCT
CCCCCCATTATAATTTTCTTTCCATCTATTCCCTGTTTTTCTTTCTTGCT
CTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_o18.g1 MSMg01no509_o18.g1 CHROMAT_FILE:
MSMg01no509_o18.g1 PHD_FILE: MSMg01no509_o18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:20 2005
         (195 letters)



>mm_chr5_15196112_15196706
          Length = 595

 Score =  331 bits (171), Expect = 2e-95
 Identities = 186/191 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agatgctcttcttgaaactatggataattaaaatatcagttcagttaacttgtggagaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agatgctcttcttgaaactatggataattaaaatatcagttcagttaacttgtggagaaa 260

                                                                       
Query: 61  aagaactcagaacttggctatagatgttataacttacttggaatgtatgtgtgcatgtgc 120
           || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 aataactcagaacttggctatagatgttataacttactttgaatgtatgtgtgcatgtgc 320

                                                                       
Query: 121 attgtgttttagagtatgggtgagtgagtgttgctgtgtgtgtgtgtgtgtgtgtgtgtg 180
           ||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attgtgcctgagagtatgggtgagtgagtgttgctgtgtgtgtgtgtgtgtgtgtgtgtg 380

                      
Query: 181 tgtgtgtgtgt 191
           |||||||||||
Sbjct: 381 tgtgtgtgtgt 391


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 595
Length adjustment: 8
Effective length of query: 187
Effective length of database: 587
Effective search space:   109769
Effective search space used:   109769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)