Query= MSMg01no509_o19.b1 MSMg01no509_o19.b1 CHROMAT_FILE:
MSMg01no509_o19.b1 PHD_FILE: MSMg01no509_o19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:20 2005
(644 letters)
>mm_chr5_7407339_7408380
Length = 1042
Score = 1052 bits (544), Expect = 0.0
Identities = 614/648 (94%), Gaps = 22/648 (3%)
Strand = Plus / Plus
Query: 7 gaattcccaaagtt-----tttctcatttcataaaaattggatgaccagctcatcaagaa 61
|||||||||||||| | |||||||||||||||| || ||||||||||||||||
Sbjct: 207 gaattcccaaagttaaaaat----catttcataaaaattg-attaccagctcatcaagaa 261
Query: 62 ggtgcaacaaccatcaatatgtttcatataatgatatagcttcaaagtaaatgaagctaa 121
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 262 ggtgcaacaatcatcaatatgtttcatataatgatatagcttcgaagtaaatgaagccaa 321
Query: 122 aaactctgggactccagagagaaacctgagattgtataatcatagtaggacatttaccat 181
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 322 aaactctgggactccagagagaagcctgagattgtataatcatagtaggacatttaccat 381
Query: 182 ccttctccaaaacggatagcataataaaagtcatagttggtttgaaaaaacactgttcag 241
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ccttctccaaaatggatagcataataaaagtcatagttggtttgaaaaaacactgttcag 441
Query: 242 catgttaacatgattactatgtataaattgttacactttgtaccatgaaataccattcct 301
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 442 catgttaacatgattactatgtataaattgttacactttgtaccatgaaatatcattcct 501
Query: 302 ttaaaatatagagagtatttgttgagatagattctcttgtctgaagtaaaacaaatctca 361
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ttaaaatatagag--tatttgttgagatagattctcttgtctgaagtaaaacaaatctca 559
Query: 362 aattttgcaaaaca-----cccccctattggtgtaggagctatgatagtttaataaagcc 416
|||||||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct: 560 aattttgcaaaataatgggc-----tattggtgtaggagctatgatagtttaataaagcc 614
Query: 417 attagcagcctgctgactttgaacactttatatcctgcttcaagtagtcttaaagacatc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 attagcagcctgctgactttgaacactttatatcctgcttcaagtagtcttaaagacatc 674
Query: 477 agtactgtgtaatacccaagtttgctttgatcattggaagataacaaaaccgatacacct 536
|||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||
Sbjct: 675 agtactgtgtaatacccaagtttgctttgatcattggaagatgactaaaccgataaacct 734
Query: 537 agctcttgccatgcctagaaaatatctattaaattgttgaaactaaaatctgttttgcat 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 agctcttgccatgcctagaaaatatctattaaattgttgaaactaaaatctgttttgcat 794
Query: 597 ctcccaaatgtctaaaagcaattgagaaacatactatttgtaagcagt 644
|||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 795 ctcccaaatgtctaaaagcaattgagaaacatacaatttgtaagcagt 842
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1042
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1032
Effective search space: 654288
Effective search space used: 654288
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no509_o19.g1 MSMg01no509_o19.g1 CHROMAT_FILE:
MSMg01no509_o19.g1 PHD_FILE: MSMg01no509_o19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:20 2005
(645 letters)
>mm_chr5_7647373_7648417
Length = 1045
Score = 1116 bits (577), Expect = 0.0
Identities = 628/649 (96%), Gaps = 8/649 (1%)
Strand = Plus / Minus
Query: 1 ttgcaatatatttcttataaataatttaaatttgctgatactatgatgctttctccaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 ttgcaatatatttcttataaataatttaaatttgctgatactatgatgctttctccaaag 635
Query: 61 caaataccatatgatattaaaacatactatataaagtggagatttatttataattttaaa 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 634 caaataccatatgatattaagacatactatataaagtggagatttatttataattttaaa 575
Query: 121 gaagtaatatattttaatatataaagagaagtgtctttatatattataaacaatgacttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 gaagtaatatattttaatatataaagagaagtgtctttatatattataaacaatgacttt 515
Query: 181 gaccaaatgaaaataactggtatgtttagcttcagtcaaagaaatgtttatgaattaaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gaccaaatgaaaataactggtatgtttagcttcagtcaaagaaatgtttatgaattaaca 455
Query: 241 ttcttcttttt----tcagttgcaataacacataagcataaaagatttgactgattcatt 296
|||||| | ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 454 ttcttc----tgacctcagttgcaataacacatacgcataaaagatttgactgattcatt 399
Query: 297 attcttaatgctgttaactgaattgtgtccctctaactttgtttctctaaatatttttta 356
||||||||| |||| ||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 398 attcttaatactgtcaactgaattgtgtccctctaactttgtttttttaaatatttttta 339
Query: 357 ttagatattttctttatttacatttcaaatgttatcgccttttctggtttcccctctgaa 416
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 338 ttagatattttctttatttacatttcaaatgttatcgcctttcctggtttcccctctgaa 279
Query: 417 acccccctaccccctctctcctccccttgatcaccaacccacccactccagtttcatggc 476
| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 278 aaccccctaccccttctctcctccccctgatcaccaacccacccactccagtttcatggc 219
Query: 477 cctggcattcccctacactggggcatagagtcttcacagcaccaagggcctctgctccca 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 cctggcattcccctacactggggcatagagtcttcacagcaccaagggcctctgctccca 159
Query: 537 ttgatgacggactaggccatcttctgctacatatgcagctggagccatgagactcaccat 596
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 158 ttgatgatggactaggccatcttctgctacatatgcagctggagccatgagactcaacat 99
Query: 597 gtgtattctttggttggtggtttagtccctgggagctctggggttgctg 645
||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 98 gtgtattctttggttggtggtttagtccctgggagctctgggggtgctg 50
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space: 657225
Effective search space used: 657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
