Query= MSMg01no510_c09.b1 MSMg01no510_c09.b1 CHROMAT_FILE:
MSMg01no510_c09.b1 PHD_FILE: MSMg01no510_c09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:39 2005
(640 letters)
>mm_chr5_12577762_12578799
Length = 1038
Score = 1093 bits (565), Expect = 0.0
Identities = 620/647 (95%), Gaps = 16/647 (2%)
Strand = Plus / Minus
Query: 1 catagtgtttctagtgtaatatgagaacagtaaattctgataaaatatcattaggtcgct 60
|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 942 catagtatttctagtgtaatatgagaacagtaaagtctgataaaatatcattaggttgct 883
Query: 61 tattttttatgtatgcatatttgcagggacctgaatatatgttgtgccataaaggtcaga 120
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 882 tattttttatgtatacatatttgcagggacctgaatgtatgttgtgccataaaggtcaga 823
Query: 121 agagggcatagaatcccccagggctggagttaaaagcagttatgagccatccaatgtgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 agagggcatagaatcccccagggctggagttaaaagcagttatgagccatccaatgtgag 763
Query: 181 tgctaagaactgcatctggaccctttggaggagtagacaggtctcctaaccatttctttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 tgctaagaactgcatctggaccctttggaggagtagacaggtctcctaaccatttc---- 707
Query: 241 tttt-------cacagtggactcttttgtcttctttaataataaacataacaataatcaa 293
| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 ---tccagccacacagtggactcttttgtcttctttaataataaacataacaataatcaa 650
Query: 294 gtctacaattagcctttgcttcataatattgaattaatatttatctaagctttctaagac 353
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 ttctacaattagcctttgcttcataatattgaattaatatttatctaagctttctaagac 590
Query: 354 tgcctaaaataatcttactacattgtgtaacatatatgacttatctgtcataaaatgttc 413
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 589 tgcctaaaataatcttactacattgtgtaac--atgtgacttatctgtcataaaatgttc 532
Query: 414 atgacatatttctatcgcaaatttatattaaggaaattcgcagaaaaaattaataaacat 473
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 531 atgacatatttcgatcgcaaatttatattaaggaaattagcagaaaaaattaataaacat 472
Query: 474 tacttttttctccaccaacttaagatgtaatatataaatatataaaatgaaaatacgttt 533
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 471 tacttttttctccaccaacttaagatgtaatatataaatatataaaatgaaaatactttt 412
Query: 534 atcttcaaatactttcccaattgtccttgtgatacaatataatagaaatagatatttcat 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 atcttcaaatactttcccaattgtccttgtgatacaatataatagaaatagatatttcat 352
Query: 594 tctgtgaactagacaactcaatattcgctatagtttagagatgttat 640
|||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 351 tctgtgaactagacaactcaatgttcgctatagtttagagatgttat 305
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1038
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1028
Effective search space: 647640
Effective search space used: 647640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no510_c09.g1 MSMg01no510_c09.g1 CHROMAT_FILE:
MSMg01no510_c09.g1 PHD_FILE: MSMg01no510_c09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:39 2005
(527 letters)
>mm_chr5_12399695_12400621
Length = 927
Score = 915 bits (473), Expect = 0.0
Identities = 512/525 (97%)
Strand = Plus / Plus
Query: 1 agcccccggcttgagtagtttcggatccactgctatgacacactgactacagtgtgctaa 60
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 201 agcccccggcttgagtagttttggatccacagctatgacacactgactacagtgtgctaa 260
Query: 61 gaggtgcacattaggaagtcacatggtagaaatttcaactgaagtctcattacttctaga 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggtgcatattaggaagtcacatggtagaaatttcaactgaagtctcattacttctaga 320
Query: 121 aagggtgaacattttcctccttggtgatgccaacatgtaccttagaaaggcggtgtgttt 180
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 aagggcgaacattttcctccttggtgataccaacatgtaccttagaaaggcggtgtgttt 380
Query: 181 tgtaggagatgttgaaatttgaagctaggtgaggttgaactaaggcccacatgtttttga 240
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 tgtaggagatgatgaaatttgaagctaggtgaggttgaactaaggcccacatgtcagtga 440
Query: 241 taccttccagaagcataaattaactttcatatgttacattcatgaattgtatttagctat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taccttccagaagcataaattaactttcatatgttacattcatgaattgtatttagctat 500
Query: 301 gatcaatcacaacaaaattgagtgcaattaaatgtacatgatttattgattatatgtagt 360
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 501 gatcaatcacaacaaaattgagtacaattaaatgtacatgatttgttgattatatgtagt 560
Query: 361 tttctaattaatgtaactctatgtacatttttatagaacatatggttatatatactggat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 tttctaattaatgtaactctatgtacatttttatagaacatatggttatatatactgtat 620
Query: 421 agcatataagattccatgtgtttaaaaatgattatgtatactataacttatatataagat 480
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtatataagattccatgtgtttaaaaatgattatgtatactataacttatatataagat 680
Query: 481 accactatacgttataggtttaatgggttatattatagatagaag 525
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 accactatacgttataggtttaatgggttatattatagatagaag 725
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space: 474089
Effective search space used: 474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
