BAC Information

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BAC

Clone NameMSMg01-510K09
Chromosome5 (Build37)
Map Location 23,488,208 - 23,488,750
singlet/doubletsinglet
Overlap geneDrctnnb1a
Upstream geneLhfpl3, LOC100042101, LOC100042082, 4930580E04Rik, BC050254, Srpk2, Pus7, Rint1, 4933427G23Rik, Tomm7, LOC671410
Downstream geneLOC627317, Klhl7, LOC100042211, Nupl2, LOC434047, LOC100042244, Kcnh2, Nos3, Atg9b, Abcb8, Accn3, Cdk5, Slc4a2, Fastk, Tmub1, Centg3, Gbx1, Asb10, 4931409K22Rik, Abcf2, LOC100042348, Smarcd3, 1700022A21Rik, Nub1, 2810046M22Rik, Crygn, Rheb, Prkag2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510K09.T7 (MSMg01no510_k09.b1)MSMg01-510K09.TJ (MSMg01no510_k09.g1)
ACCAG584036AG584037
length723725
length of high quality
(start - end)
644 (80 - 723)59 (255 - 313)
definitionCHROMAT_FILE: MSMg01no510_k09.b1 PHD_FILE: MSMg01no510_k09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:17 2005CHROMAT_FILE: MSMg01no510_k09.g1 PHD_FILE: MSMg01no510_k09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTGACTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCACAAGACC
GCGGAATTCCTGGAATTCCACTAAATGTCCAGCAGGCACTGCAGCCCAAG
TCCTTCTCTGCCAGCGAGAGGCTCTTGGGGAGATTGCAGTTTCTTGGGGT
TCACAGACAGCTTCAGTGGGCTTACAGCTAAAGGGAGGGACACAAGTGTC
TCTCTCTGCACTTGCCAGGATGGTGTCAGCAGGGTTGTTATACTGTTGCC
ATAGTTACATTCTGGGTAACCTCTACAAGTTTCCCTACTTTTACCTAGTA
TTTGGGTGGGAGCTGGATTTCTGTTTAGTTTTCCTCCTTTAGGTTTCTCT
GTATGCCTGTCCCTCAGAGGGGGTCTCCTCTCCCATTTTTAGGCCCTCCT
TCAGCAATAGAACGCTGTTGCTAGCTAGCCCGCCCTTCACCTACTGTAGC
ACTTGGGAGAGCAGGTCCTGCACCTCACCTGGGTGGTACAGTAGAACTGG
CCCTGGAGGTGGGAGGGGGGCATGGGTGAGCTAGCCTGGAGGGCATGAGC
ACAGGAGAGCTAGCTCTACCGCTTGCTGGCTGTGTCATTTGAAGAGCTAG
CCAGGGCAGTACTGGAGAGCTGGCCCTGATGGCTTGGGTGTGGGAGATCT
AGCAGGCTGACTAACTCAGCTACCACCCAGGCCCAGATCCAGGACTATGA
GTTGTCCCACTTAGCATCCACCC
CCCAACGATGACAGGAGAGGCCCGGAGGGGNCGGGGTTCCTGACCCGCGN
GAANNANAGGAGGTTACANGGACGAGGGAGNAANNNNGACNANAAGANNG
NGACGGNGGNGGNNNGTCCACCCCGAGACACNACCAGGAGAAGGGGCCCG
GNNGGAGNAGGTGTGGCCNNGGCGGAGGAAGCANGNCACGGGGGGCAGGG
GCCCCAAGACCCNCANNCCAGCCGCCACCAGAACAAGAGCGGNGACCCTC
TTATCCTCCATCCCCACATCTGCCTGGGTTCTGCCATGCTCCCACCTTAA
CTGAACCTCTGAAGTTTTTTTTTTGCCCCAAANAAAAGNCCNCACAAGAG
GAGCATTAGTCTTGGTGTCTGCTCACAGCAGTAAAACCCTAAGACAGTGA
CCAAACTTATTTTATTACAGTCTCATCTATTTGCCCTTCTCTGCATATAT
ACTTATTTTAGTTTGCTTTGCTGTTGTTGATTGCTTGCTTGTTCAAGGCA
GAGTTTCTCTGTGAAGCCCTGGCTGTCCCGGAGCCCGATCTGTGGACTAG
GTTGGCCTTGAACTTACAGATCCGCTCTGCCTCCCCAGTACTGGGACTAA
AGATGTGTACCATCACTACCACTACACCTGGGATCCCTATGTATATTTTT
AGAAAATCCCCCACTGATCCTTTTTGACTCATATAGTGTTTATCTGCCTG
GTTGTGGATGGCACACTGCCTTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_k09.b1 MSMg01no510_k09.b1 CHROMAT_FILE:
MSMg01no510_k09.b1 PHD_FILE: MSMg01no510_k09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:17 2005
         (644 letters)



>mm_chr5_23488208_23489251
          Length = 1044

 Score = 1011 bits (523), Expect = 0.0
 Identities = 538/543 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagcaggcactgcagcccaagtccttctctgccagcgagaggctcttggggagattgcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 cagcaggcactgcagcccaagtccttctctgccagcgagaggctcttggggagattgcag 484

                                                                       
Query: 61  tttcttggggttcacagacagcttcagtgggcttacagctaaagggagggacacaagtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tttcttggggttcacagacagcttcagtgggcttacagctaaagggagggacacaagtgt 424

                                                                       
Query: 121 ctctctctgcacttgccaggatggtgtcagcagggttgttatactgttgccatagttaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ctctctctgcacttgccaggatggtgtcagcagggttgttatactgttgccatagttaca 364

                                                                       
Query: 181 ttctgggtaacctctacaagtttccctacttttacctagtatttgggtgggagctggatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ttctgggtaacctctacaagtttccctacttttacctagtatttgggtgggagctggatt 304

                                                                       
Query: 241 tctgtttagttttcctcctttaggtttctctgtatgcctgtccctcagagggggtctcct 300
            |||   |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gctggcgagttttcctcctttaggtttctctgtatgcctgtccctcagagggggtctcct 244

                                                                       
Query: 301 ctcccatttttaggccctccttcagcaatagaacgctgttgctagctagcccgcccttca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ctcccatttttaggccctccttcagcaatagaacgctgttgctagctagcccgcccttca 184

                                                                       
Query: 361 cctactgtagcacttgggagagcaggtcctgcacctcacctgggtggtacagtagaactg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 cctactgtagcacttgggagagcaggtcctgcacctcacctgggtggtacagtagaactg 124

                                                                       
Query: 421 gccctggaggtgggaggggggcatgggtgagctagcctggagggcatgagcacaggagag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 gccctggaggtgggaggggggcatgggtgagctagcctggagggcatgagcacaggagag 64

                                                                       
Query: 481 ctagctctaccgcttgctggctgtgtcatttgaagagctagccagggcagtactggagag 540
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 63  ctagctctaccgcttgctggctgtggcatttgaagagctagccagggcagtactggagag 4

              
Query: 541 ctg 543
           |||
Sbjct: 3   ctg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space:   655556
Effective search space used:   655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)