BAC Information

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BAC

Clone NameMSMg01-511I13
Chromosome5 (Build37)
Map Location 42,727,618 - 42,728,181
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC208522, Rab28, Bapx1, A230054D04Rik, LOC384308, LOC100040588
Downstream geneEG636612, LOC433883, EG665934, Cpeb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511I13.T7 (MSMg01no511_i13.b1)MSMg01-511I13.TJ (MSMg01no511_i13.g1)
ACCAG584707AG584708
length716736
length of high quality
(start - end)
566 (69 - 634)546 (75 - 620)
definitionCHROMAT_FILE: MSMg01no511_i13.b1 PHD_FILE: MSMg01no511_i13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:26 2005CHROMAT_FILE: MSMg01no511_i13.g1 PHD_FILE: MSMg01no511_i13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCATACATTTGTATATTGAATAAATGCTAAAAATTACACACACAG
ACACACACACACACAGGTATTGTTTTAAAATAAACTTTTATTTTAAATAT
CCTTAAATCATTAAAATAAATGGTAAAGTGATATAAGTGCTTATAGACCC
AGGACCAGTTAAAATCTCCCAGGTAGAAAGAGGTGAGTGGGATGCTTCGG
AAACCTTGTTTTAAAGAACACTTTGTAGTTGATGCCCAGGAGCTTGCTTT
TCTATCTAAATAATAAATTGTTCCCACCTTCCAGGAAACAGACTGTGGGA
GACTCTGAATACTGAAAAACAAGGTCAAGTTCAGTACTTACACAAGAGGT
TGGAGTGGTCAATGAGGAGAAGACTTTACCCTATGTCAGTGAGAGATGCT
AATTCAGACTAATGCCATGGCTTATCCATCTTAGCTGGCTTCTCCCTTCC
CTGCAGATGTTTCTTGTTGCCGTTTTTTCAAAAGCATTGCTGGTGATTTA
TTTGCTCAAATGCATGACCACTAGCTTGTTTTGCTCCTGATGAATGATTT
ATTCATGATATATGGCCATCTGTTATGCACAGGAGACAGGGCTGTTTTAT
ATTATTTTTGTTTTTATTTGTTGTTAGCAGGTACACAGTAGGGAGTAAGA
AAACATCTCAGGGATG
AATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGGGCTTCCCGTGTCCCCCACCTTTA
GCTCCGGACCACACTCACCTGCCACCAGCCTGGGAAGGGAGAGCCGGGTC
CTCAACCCTGCTGCCACCATCAGCCCTCAAGCTTTGAGCTCAGGTCTAGA
GGTAAACAGAGCAGTCACAGGGCCACTCAGACCAGCCAGTGCTCAGGGTT
CTTGGTGAAAAGATGCCTAGAGAAAGGCCATGTGGAGAGTCCTCAGTGCA
CACGGTTCTGAGTTGGTTCCTTTTCCCATAATTGCTTTGCTTTTACACAT
TGAAGAGCTTTGAACAGGGCTCTCGAGTCACCCTGGCCACCCATCGAGTC
TGATGTGGAGCCTAACAGCTGGAACAGGAGGCCCTGACTCTGTAGACTCA
GGTTTCAGTGTTGCTTCTCAGACCTTCTGCAGTGACCGGGAGGAGCTCTG
TGTCCCCATGTTTGCAGATCATCTGCAGATCCGTGGGCCTGGCCTCCTGG
ATCACTGCCACACTCCCCACTCTGTTCAGGAACACTAAATGTTGAAATGT
GGATGCATACCAAAATAAAGGCAATCCATTGTGTGAAAAAAAAAAAGAAA
AAAGAATAGAATAGATAAAGAAAAAGAAAAAGAAAAAGAATATGATAAAG
AATTAGAAATGACCGAAAGAAAGAAAGAAAGAATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_i13.b1 MSMg01no511_i13.b1 CHROMAT_FILE:
MSMg01no511_i13.b1 PHD_FILE: MSMg01no511_i13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:26 2005
         (566 letters)



>mm_chr5_42727416_42728381
          Length = 966

 Score = 1067 bits (552), Expect = 0.0
 Identities = 562/566 (99%), Gaps = 2/566 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tattgaataaatgctaaaaattacacacacagacacacacacacacaggtattgttttaa 60
           ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 203 tattgaataaatgctaaaaattacacacacag--acacacacacacaggtattgttttaa 260

                                                                       
Query: 61  aataaacttttattttaaatatccttaaatcattaaaataaatggtaaagtgatataagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aataaacttttattttaaatatccttaaatcattaaaataaatggtaaagtgatataagt 320

                                                                       
Query: 121 gcttatagacccaggaccagttaaaatctcccaggtagaaagaggtgagtgggatgcttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcttatagacccaggaccagttaaaatctcccaggtagaaagaggtgagtgggatgcttc 380

                                                                       
Query: 181 ggaaaccttgttttaaagaacactttgtagttgatgcccaggagcttgcttttctatcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaaaccttgttttaaagaacactttgtagttgatgcccaggagcttgcttttctatcta 440

                                                                       
Query: 241 aataataaattgttcccaccttccaggaaacagactgtgggagactctgaatactgaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aataataaattgttcccaccttccaggaaacagactgtgggagactctgaatactgaaaa 500

                                                                       
Query: 301 acaaggtcaagttcagtacttacacaagaggttggagtggtcaatgaggagaagacttta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 501 acaaggtcaagttcagtacttacacaagaggttggagtggtcaatgaggagaagaattta 560

                                                                       
Query: 361 ccctatgtcagtgagagatgctaattcagactaatgccatggcttatccatcttagctgg 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 561 ccctatgtcagtgagagatgctaattcagactaatgccatggcttatccatcttagttgg 620

                                                                       
Query: 421 cttctcccttccctgcagatgtttcttgttgccgttttttcaaaagcattgctggtgatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttctcccttccctgcagatgtttcttgttgccgttttttcaaaagcattgctggtgatt 680

                                                                       
Query: 481 tatttgctcaaatgcatgaccactagcttgttttgctcctgatgaatgatttattcatga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tatttgctcaaatgcatgaccactagcttgttttgctcctgatgaatgatttattcatga 740

                                     
Query: 541 tatatggccatctgttatgcacagga 566
           ||||||||||||||||||||||||||
Sbjct: 741 tatatggccatctgttatgcacagga 766


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space:   531536
Effective search space used:   531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)