BAC Information

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BAC

Clone NameMSMg01-511J17
Chromosome5 (Build37)
Map Location 50,354,208 - 50,354,510
singlet/doubletsinglet
Overlap geneGpr125
Upstream geneLOC100041668, LOC100041659, EG433885, LOC666223
Downstream geneEG637307, LOC100041015, LOC242987, EG624734
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511J17.T7 (MSMg01no511_j17.b1)MSMg01-511J17.TJ (MSMg01no511_j17.g1)
ACCAG584763AG584764
length748709
length of high quality
(start - end)
634 (44 - 677)303 (75 - 377)
definitionCHROMAT_FILE: MSMg01no511_j17.b1 PHD_FILE: MSMg01no511_j17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:31 2005CHROMAT_FILE: MSMg01no511_j17.g1 PHD_FILE: MSMg01no511_j17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTCATCTCTGAGCCCCATTTTTAATGGGTTTATTTGATTTTCT
GGAGTTCACCTTCTTGAGTTTTTTATATATATTGGATATTAGTCCCTTAT
CTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTT
GTCTTGTAGACGGTTTCTTTTGCCTTGCAGAAGCTTTGCAACTTTATGAG
GTCCCATTTATGGATTCTCGATCTTACTGCACAAGCCATTGCTGTTCTAT
TCAGGAACTTTTCCCCTGTGCCCATATCTTCGAGGCTTTTCCCTACTTTC
TCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTAGAGTTCCTTAATCCA
CTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTCGCATTC
TACTATATAATAACCGCCAGCTGTGTCAGTACCATTTGTTGAAAATGCTG
TCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGACC
ATAGGTGTGTGGGTTCATCTCTGGGTCTTCAATTCTGTTCCATTGGTCTA
CTTGTCTGTCACTATACCAGTACCATGCAGTTTTTTTCACAATTGCTCTG
TAGTAATGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTATC
CTTGAGAAGAGATTTTGCTATCCTAGGTTTTTTGTTATCCAGATGAAT
ATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCAGTTGTGAGTAGGTTCACTGGAGT
CCTGATGTGCACCCAGCTGAGCACACCCCGCCTCAGAGTTTGCAGAACTG
GCTGTGGATACGTATTGTTCAGACCTCCAGAAAGTGCGGAATTGCACGTA
CAAAGAAGGGCCACTTGTGAGAGGAGGGCACTTGCTGAAGCTGCTGCCAT
GAACCTGCTTTGGGGTTAGGGAATGGTAGAGGTGTCCTCTGCATAAAGGA
GCTAGCTGAGAAGCGCAGGTTGCTTCCATTCAAGTCCATCTTGGGGAACT
TGTACATTTGCTAGATTGACTGGCAGGACCGTGGGTGACTCGGGACAAGG
GTCACAGCTAGGTCCAACTAATTGGCCTAAAGGAACCCCCGGGAAGGGGC
CCCCTAAAGTGGCCCAAAATTTTTGGGAACCCCCCCGGGAGGTTGAAAAT
TTTTTTGGGAAAAAAAATTTATTCCTTTTTTTAACCCCCCCCCGTTTTTT
TTTTTTTAAAGAGGGGCGCGNNTTTTTTCACTTTACTGTTTTCTTTTTTC
TCCTTTTTTTTNCCCACCTTTCCCCTATCTCCATCTCCCCCTTTTTTTTT
TGTTCCCTTTTCTTGNTTTTTTTCACTTGTTGCCACCCCTTTTACTCTTT
TTCGTGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_j17.g1 MSMg01no511_j17.g1 CHROMAT_FILE:
MSMg01no511_j17.g1 PHD_FILE: MSMg01no511_j17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:31 2005
         (303 letters)



>mm_chr5_50354008_50354710
          Length = 703

 Score =  563 bits (291), Expect = e-165
 Identities = 300/303 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagttgtgagtaggttcactggagtcctgatgtgcacccagctgagcacaccccgcctc 60
           ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 503 tcagttgtgagtaggttcactggaggcctgatgtgcacccagctgagcgcaccccgcctc 444

                                                                       
Query: 61  agagtttgcagaactggctgtggatacgtattgttcagacctccagaaagtgcggaattg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 agagtttgcagaactggctgtggatacgtattgttcagacctccagaaagtgcggaattg 384

                                                                       
Query: 121 cacgtacaaagaagggccacttgtgagaggagggcacttgctgaagctgctgccatgaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cacgtacaaagaagggccacttgtgagaggagggcacttgctgaagctgctgccatgaac 324

                                                                       
Query: 181 ctgctttggggttagggaatggtagaggtgtcctctgcataaaggagctagctgagaagc 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 323 ctgctttggggttagggaatggtagaggtgtcccctgcataaaggagctagctgagaagc 264

                                                                       
Query: 241 gcaggttgcttccattcaagtccatcttggggaacttgtacatttgctagattgactggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gcaggttgcttccattcaagtccatcttggggaacttgtacatttgctagattgactggc 204

              
Query: 301 agg 303
           |||
Sbjct: 203 agg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 703
Length adjustment: 9
Effective length of query: 294
Effective length of database: 694
Effective search space:   204036
Effective search space used:   204036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)