BAC Information

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BAC

Clone NameMSMg01-511O15
Chromosome5 (Build37)
Map Location 109,211,227 - 109,211,814
singlet/doubletsinglet
Overlap gene1810008K16Rik
Upstream geneEvi5, 1700013N18Rik, Rpl5, 2900024C23Rik, LOC675566, Mtf2, Tmed5, Ccdc18, EG633606, LOC666614, Dr1, Pigg, Pde6b, Atp5k, Mfsd7, Pcgf3, LOC100042557, Cplx1, LOC100042571, Gak, Tmem175, Dgkq, Idua, Slc26a1, LOC100042616, Fgfrl1, LOC671564
Downstream geneEG627479, EG435864, EG667087, LOC100041615, V2r16, LOC545792, EG384219, Vmn2r12, LOC231589, EG231591, LOC667128, EG211223, EG384220, EG636052, EG384221, LOC667159, LOC667171, Tpte2, EG667185, LOC671695, LOC636173, LOC624831, LOC100041734, LOC100042749, LOC667198, 4930522L14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511O15.T7 (MSMg01no511_o15.b1)MSMg01-511O15.TJ (MSMg01no511_o15.g1)
ACCAG584997AG584998
length740734
length of high quality
(start - end)
593 (45 - 637)544 (73 - 616)
definitionCHROMAT_FILE: MSMg01no511_o15.b1 PHD_FILE: MSMg01no511_o15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:54 2005CHROMAT_FILE: MSMg01no511_o15.g1 PHD_FILE: MSMg01no511_o15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTAGCTCATCCGCATTTCCACATGATCTATAAACAAATTAATATTT
GAAGTAGACTTATGTTTTTTTTTTATTGCCAATTCTAGGACAACTTGGGA
AAAATGAAAAATGTTCTGTTATTGATAGGCTTCAAAAGGGAGAGGAAGGA
CTAAAGAGATGGATTAACTGTTAAGAGCACTAATGGTTGTTTCGGAGGAT
CCAGATCCCTTTCCGTACCCACACAGTATCTCACAACCGTCTGCAATGCC
TGTTTCAAGGGATTTGATAACCTCTTCTTTCCTCCAGAGGCACGAGGCGT
ACAAGCAGATAAAATACCCATGCACGTTAATAAGCTAAAATTAAAAAAGA
GAGGGGCTGACAACTGGTCAAAGAGCAGAGAATAAATGTGAGTGGAATGC
TCAGTCACAAATGGGACATCCCTTCCCCTCAAGACTCAGTGAGCCTCAAC
CGAAGAATGGATAAAGAAAATGTGGTACATTTACACAGTGGAGTACTAGT
CAGCTGTTAGGACAAATGACATTATTGTATTTACAGCCAAATGGTGACAC
TAGAATCATCCTGAGGAAGGCAACTCAGACTTATAAAGACAAACATAATA
TGTACTCACAAGTGGATATTAGCTGTTAAGTAAAGGATAATCATACTACA
TTCACAGACCCAGAGAGGCTAAGTATACAGGACGGTTCCG
ATGCATTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACGCAGTTGAATCCTTCTCAACAGTCTG
TTTTACGGGAAAACTTCATTACCGCCGTTCCCCAGCTGAAGAGTTCTGAA
TTCACGCAGTTGAATCCTTCTCAACAGTCTGTTTTACGGGAACCTTCATT
ACCATAACCCGCAGTTCTGGTTCCGGAATGAGGGATCTTCCTTGCGTCGG
TGATGGTAACCGTCCCGGTTTTTCTCATCCCAGGATTTCTCATCCCGGGT
TTCAGCACCAACTCTTGCACGCTTTCTCACGACCGGTCAGGAAGAACACA
ACAAACCAGAATCTTCTGCGGCAAAACTTTATTGCTTACATCTTCAGGAG
CAAGAGTGCGAGCCCCAAGCCCCCAGCCCCCTGCTTACATCTTTAGGAGC
CAGAGCGCCAGAGCGCCAGAGTGCAGAGCAAGAGCTCTATTGTTTACATC
TTTAGGAGCAAGCGAGCAAGCCCAAAGCCCCAAAGCGAAAGCGAAACCCC
CTCCCTCTCAAGGAGAGTTATCCTTCGCCTAGGACGTATCACTCCCTGAT
TGGCTGCAGCCCATGGCCGAGTTGTGGTCACGGGAAAGGCAGAGTACATG
GGGTGGAGAACTACTCTTGGCACATGCGCAGATTATTTGTTTACCACTTA
GAACACAGCTGTCAGCGCCATCTTGTGACGGTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_o15.b1 MSMg01no511_o15.b1 CHROMAT_FILE:
MSMg01no511_o15.b1 PHD_FILE: MSMg01no511_o15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:54 2005
         (593 letters)



>mm_chr5_109211023_109212013
          Length = 991

 Score = 1007 bits (521), Expect = 0.0
 Identities = 573/591 (96%), Gaps = 5/591 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttagctcatccgcatttccacatgatctataaacaaattaatatttgaagtaga 64
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttagctcataagcatttccacatgatctataaacaaattaatatttgaagtaga 264

                                                                       
Query: 65  cttatgttttttttttattgccaattctaggacaacttgggaaaaatgaaaaatgttctg 124
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttatg--ttttttttattgccaattctaggacaacttgggaaaaatgaaaaatgttctg 322

                                                                       
Query: 125 ttattgataggcttcaaaagggagaggaaggactaaagagatggattaactgttaagagc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttattgataggcttcaaaagggagaggaaggactaaagagatggattaactgttaagagc 382

                                                                       
Query: 185 actaatggttgtttcggaggatccaga-tccctttccgtacccacacagtatctcacaac 243
           ||||||||||||||| ||||||||||| ||||||||| |||||||| |||| ||||||||
Sbjct: 383 actaatggttgtttcagaggatccagattccctttccatacccacatagtagctcacaac 442

                                                                       
Query: 244 cgtctgcaa-tgcctgtttcaagggatttgataacctcttctttcctccagaggcacgag 302
           | ||| ||| | |||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 443 catctacaact-cctgtttcaagggatttgataacctcttctttcctccaaaggcatgag 501

                                                                       
Query: 303 gcgtacaagcagataaaatacccatgcacgttaataagctaaaattaaaaaagagagggg 362
           || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 502 gcatacaagcagataaaatacccatgcacattaataagctaaaattaaaaaagagagggg 561

                                                                       
Query: 363 ctgacaactggtcaaagagcagagaataaatgtgagtggaatgctcagtcacaaatggga 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ctgacaactggtcaaagagcagagaataaatgtgagtggaatgctcagtcacaaatggga 621

                                                                       
Query: 423 catcccttcccctcaagactcagtgagcctcaaccgaagaatggataaagaaaatgtggt 482
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 622 catcccttcccctcaagactcagtgagcctcaaccgaagagtggataaagaaaatgtggt 681

                                                                       
Query: 483 acatttacacagtggagtactagtcagctgttaggacaaatgacattattgtatttacag 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 acatttacacagtggagtactagtcagctgttaggacaaatgacattattgtatttacag 741

                                                              
Query: 543 ccaaatggtgacactagaatcatcctgaggaaggcaactcagacttataaa 593
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ccaaatggtgacactagaatcatcctgaggaaggcaactcagacttataaa 792


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 991
Length adjustment: 10
Effective length of query: 583
Effective length of database: 981
Effective search space:   571923
Effective search space used:   571923
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)