Query= MSMg01no512_a06.b1 MSMg01no512_a06.b1 CHROMAT_FILE:
MSMg01no512_a06.b1 PHD_FILE: MSMg01no512_a06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:02 2005
(367 letters)
>mm_chr5_53744404_53745170
Length = 767
Score = 497 bits (257), Expect = e-145
Identities = 320/347 (92%), Gaps = 15/347 (4%)
Strand = Plus / Minus
Query: 18 gaaaaaccaaaagccaaaaa-c------ctttaaacaaaaaaacaaaacaaacaaacaaa 70
|||||||||||||||||||| | | ||||||||||||||||||||||||||||
Sbjct: 672 gaaaaaccaaaagccaaaaatcaaaaaacaaaaaacaaaaaaacaaaacaaacaaacaaa 613
Query: 71 caaaaaaaccaaccaaa-----ccaaaaaaa-accaaaacaacaaaaaacgaacaaacaa 124
|||||| ||||||||| ||||||||| | ||||| || |||||||||||||||||
Sbjct: 612 -aaaaaacccaaccaaacccccccaaaaaaacaacaaaa-aaaaaaaaacgaacaaacaa 555
Query: 125 aaaacaaagaaacaaaaaaatttataatggtttatttctgaaaatatcccttcatgcttt 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 554 aaaacaaagaaacaaaaaaatttataatggtttatttctgaaaatatcccttcacgcttt 495
Query: 185 tggacgactattggctgtgtccagcttgctacgctgttgtgagccatttccaccactctg 244
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 494 tggaccactattggctgtgtccagcttgctacgctgttgtgagccatttccaccactcag 435
Query: 245 tccattttgggcttctctagcagacatcagactattgcttatactctggtccttagaacc 304
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 434 cccattttgggcttctctagcagacatcagactattgcttaaactctggtccttagaacc 375
Query: 305 catgtaagtagaaggataatggcacttaaactctctctctctctctc 351
|||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 374 catgtaagtagaagtataatggcacttaaactctctctctctctctc 328
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space: 271364
Effective search space used: 271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no512_a06.g1 MSMg01no512_a06.g1 CHROMAT_FILE:
MSMg01no512_a06.g1 PHD_FILE: MSMg01no512_a06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:02 2005
(608 letters)
>mm_chr5_53577057_53578065
Length = 1009
Score = 1154 bits (597), Expect = 0.0
Identities = 606/609 (99%), Gaps = 1/609 (0%)
Strand = Plus / Plus
Query: 1 cacagaggctggcctcgcaataatggagtaaataaagccacagtgaaatggtgaccctaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacagaggctggcctcgcaataatggagtaaataaagccacagtgaaatggtgaccctaa 260
Query: 61 aggagggaggcagaaggaaaattctgcagattgatatcatccgagaacaggtaattacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggagggaggcagaaggaaaattctgcagattgatatcatccgagaacaggtaattacag 320
Query: 121 ttaacaatgaccaagtaaattgctttctttctaacgaaggggtggatttgccttagtgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaacaatgaccaagtaaattgctttctttctaacgaaggggtggatttgccttagtgtt 380
Query: 181 catcagggtagatcagcttgcaaagcctgagattttgagacaaaagaggtagttatagta 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catcaggggagatcagcttgcaaagcctgagattttgagacaaaagaggtagttatagta 440
Query: 241 actgcagagataggagttaagctcttttgtacaaaacccgctgacgctctacctttcccg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actgcagagataggagttaagctcttttgtacaaaacccgctgacgctctacctttcccg 500
Query: 301 aaacgttctggggggactcgctgagatgctcacatgccagcaatctgaatccctcattga 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaatgttctggggggactcgctgagatgctcacatgccagcaatctgaatccctcattga 560
Query: 361 ggctgataaagcgagacagtgaataaaaatatggattttaataagaggtgatgtgataag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggctgataaagcgagacagtgaataaaaatatggattttaataagaggtgatgtgataag 620
Query: 421 gagctattctaatatctgtgattagaagagggggagaaaaaccataattagggctttttg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagctattctaatatctgtgattagaagagggggagaaaaaccataattagggctttttg 680
Query: 481 agcaattttgtttctttcaaggatgaaagccccaactgtaatgctctgcaaatggcccct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agcaattttgtttctttcaaggatgaaagccccaactgtaatgctctgcaaatggcccct 740
Query: 541 cacgtgacacgtggacacaaatgtgctgtcctctctctc-tgtccaggtgcttcagtagt 599
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 741 cacgtgacacgtggacacaaatgtgctgtcctctctctcatgtccaggtgcttcagtagt 800
Query: 600 ccaattcta 608
|||||||||
Sbjct: 801 ccaattcta 809
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1009
Length adjustment: 10
Effective length of query: 598
Effective length of database: 999
Effective search space: 597402
Effective search space used: 597402
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
