Query= MSMg01no512_b07.b1 MSMg01no512_b07.b1 CHROMAT_FILE:
MSMg01no512_b07.b1 PHD_FILE: MSMg01no512_b07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:07 2005
(634 letters)
>mm_chr5_28660878_28661911
Length = 1034
Score = 1056 bits (546), Expect = 0.0
Identities = 598/630 (94%), Gaps = 24/630 (3%)
Strand = Plus / Minus
Query: 5 gaattcagttccatgtatcaaggaactgcaagtagagcacagagggttcagcactccttt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1001 gaattcagttccatgtatcaaggaactgcaagtagagcacagagggttcagcactccttt 942
Query: 65 atggcttccaagagcactgcactcacatggcatgcatgcatgcatgcatgcgcgcgcgca 124
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 941 atggcttccaagagcactgcactcacatggcatgcatgcatgcatgc--gcgcgcgcg-- 886
Query: 125 cacacacacacacacacacacacacacacacacacttaccttaaatattttaaagaaaaa 184
||||||||||||||||||||||||||||||||||||||||
Sbjct: 885 --------------------cacacacacacacacttaccttaaatattttaaagaaaaa 846
Query: 185 tttaaaattatgatgaggttataaaattatatgcagtaactaaggagtgtggaatggaaa 244
||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 845 ttttaaattatgatgaggttataaaattatatgcagtaactaaggagtgtagaatgcaaa 786
Query: 245 tcatagtgatcacttgccaggttcaggtttcccagcatgcttttgtgataaagtgcctag 304
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tcatagtggtcacttgccaggttcaggtttcccagcatgcttttgtgataaagtgcctag 726
Query: 305 gaacaggttttctcaagactccagagggaacctttaacacatcaagaaggtttaaatact 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 gaacaggttttctcaagactccagagggaacctttaacacatcaagaaggtttaaatact 666
Query: 365 ttccactgccttatgaaaggccatttccgttcaggtatataagtattccctcttctcccc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 ttccactgccttatgaaaggccatttccgttcaggtatataagtattccctcttctcccc 606
Query: 425 attcccatttgttatctttgttcccaaagtagttctgtttctacattcttatcaccagca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 attcccatttgttatctttgttcccaaagtagttctgtttctacattcttatcaccagca 546
Query: 485 caaacgtttactatgtatgttctcaaagaactagaaacaaaatgttaaaagtatctagtt 544
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 545 catacgtttactatgtatgttctgaaagaactagaaacaaaatgttaaaagtatctagtt 486
Query: 545 ctgaaagaactagaaacaacaatgttatagtatctagttctgaaagaactagaaacaaca 604
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ctgaaagaactagaaaaaacaatgttatagtatctagttctgaaagaactagaaacaaca 426
Query: 605 atgttatagcatctagttctgaaagaacta 634
||||||||| ||||||||||||||||||||
Sbjct: 425 atgttatagtatctagttctgaaagaacta 396
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space: 638976
Effective search space used: 638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no512_b07.g1 MSMg01no512_b07.g1 CHROMAT_FILE:
MSMg01no512_b07.g1 PHD_FILE: MSMg01no512_b07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:07 2005
(588 letters)
>mm_chr5_28494757_28495744
Length = 988
Score = 1116 bits (577), Expect = 0.0
Identities = 585/588 (99%)
Strand = Plus / Plus
Query: 1 atgggaagaggaaccgaaagtatgtttttcagatgttctttctcagaaataggagtttgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgggaagaggaaccgaaagtatgtttttcagatgttctttctcagaaataggagtttgc 260
Query: 61 ggaggttggagtgtgtgttgtaggacacgaaccccagggtggaggagactggaggacaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaggttggagtgtgtgttgtaggacacgaaccccagggtggaggagactggaggacaga 320
Query: 121 gccctctttcccagggagggaaggaggagagtttgagatccgctccggaagtcggggttc 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccctctttcccagggaggaaaggaggagagtttgagatccgctccggaagtcggggttc 380
Query: 181 aggtttgagcaggccaggcctctcccgtggtctcgccctcttgtcctagaagcctcactg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggtttgagcaggccaggcctctcccgtggtctcgccctcttgtcctagaagcctcactg 440
Query: 241 gccaggtgtaagccaggtcgtgggtgccgagccctgctccctcatcctcagcatggatgt 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 gccaggtgtaagccaggtcgtgggtgccgagccccgctccctcatcctcagcatggatgt 500
Query: 301 gaagaggactgtatggcgtgcgggtgtgtgtgaccgtgggtacacttaaaacaccgggtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaagaggactgtatggcgtgcgggtgtgtgtgaccgtgggtacacttaaaacaccgggtt 560
Query: 361 ttggatctgcactgtcccggatgtcctctggtgctcaaagacccttttgggtttgccctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttggatctgcactgtcccggatgtcctctggtgctcaaagacccttttgggtttgccctt 620
Query: 421 tggtaagagcgccgggatctacttgtctggaggccagggagtcctcagccgaggcttgcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggtaagagcgccgggatctacttgtctggaggccagggagtcctcagccgaggcttgcc 680
Query: 481 gcccctgactgcactgcactgagtagtggatgggagagtctggtaccgcactgccggttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcccctgactgcactgcactgagtagtggatgggagagtctggtaccgcactgccggttt 740
Query: 541 cctccaccatccccgcagcgcagggnagtgcattccgtcctggctgcg 588
||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 741 cctccaccatccccgcagcgcagggcagtgcattccgtcctggctgcg 788
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space: 565284
Effective search space used: 565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
