Query= MSMg01no512_c19.b1 MSMg01no512_c19.b1 CHROMAT_FILE:
MSMg01no512_c19.b1 PHD_FILE: MSMg01no512_c19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:14 2005
(691 letters)
>mm_chr5_4848820_4849910
Length = 1091
Score = 1189 bits (615), Expect = 0.0
Identities = 670/701 (95%), Gaps = 21/701 (2%)
Strand = Plus / Plus
Query: 4 ggaattcactgtccccaatttccctgcacgtgaaatagtacatctgctctgagagtcctg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ggaattcactgtccccaatttccctgcacgtgaaatagtacatctgctctgagagtcctg 258
Query: 64 agcttcggcactctcccacctgctaggagggccatgaagaccaagcttctgcccccactt 123
||||| || ||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 259 agctttgg--------cacctgctaggagggtcatgaagaccaagcgtctgcccccactt 310
Query: 124 tgctacactagtgtaatttgatgaagttttgataatgacacaagcaaagacacatggtct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tgctacactagtgtaatttgatgaagttttgataatgacacaagcaaagacacatggtct 370
Query: 184 attatctctcatagcctcttgtttttattctcttctcttgaaaaaggacttcagacttcc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 attatctctcatagcctcttgtttttattctcttctcttgaaaaaggacttcagacttcc 430
Query: 244 tgcagagtatcccattcccctactctcaggaaggaagagctcatttctatacctatacaa 303
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 431 tgcagagtgtcccattcccctactctcaggaaggaagagctcatttctatatctatacaa 490
Query: 304 aatatttctccacacaaacatattatcttacataaggggaattctgatcatgtctattaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 aatatttctccacacaaacatattatcttacataaggggaattctgatcatgtctattaa 550
Query: 364 acagtgtaaaggtgtctccccagtgcttgaacttatattcaaaactctggtgtgtatggt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 acagtgtaaaggtgtctccccagtgcttgaacttatattcaaaactctggtgtgtatggt 610
Query: 424 caacaacctagaaacccagagctcacccaaacttaccagacctgctgaagtgtctctaag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 caacaacctagaaacccagagctcacccaaacttaccagacctgctgaagtgtctctaag 670
Query: 484 ctcactcattatctgagggtgaagatgtcagtgcctgaaagcacgcccattaacacatcc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 ctcactcattatctgagggtgaagatgtcagtgcctgaaagcacgcccattaacacatcc 730
Query: 544 cagaatccatcacaagccacactcccatcccaggccctttatgtttgtcact-------- 595
||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 731 cagaatccatcacaagccacattcccatcccaggccctttatgtttgtcactgtagtagg 790
Query: 596 -----cacagtcttccctttctctggcacttttcaatgcaacttgttttatcttggaaag 650
|||| |||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 791 ccactcacaatctttcctttctccggcacttttcaatgcaacttgttttatcttggaaag 850
Query: 651 gacattaactttcagtgaaaacatcatggaaattaaaggat 691
|||||||||||||||||||||||||||||| ||||||||||
Sbjct: 851 gacattaactttcagtgaaaacatcatggagattaaaggat 891
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1091
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1081
Effective search space: 736161
Effective search space used: 736161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no512_c19.g1 MSMg01no512_c19.g1 CHROMAT_FILE:
MSMg01no512_c19.g1 PHD_FILE: MSMg01no512_c19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:14 2005
(602 letters)
>mm_chr5_4896813_4897808
Length = 996
Score = 1046 bits (541), Expect = 0.0
Identities = 585/603 (97%), Gaps = 8/603 (1%)
Strand = Plus / Minus
Query: 1 ttaatcataaaaaaaaatttgtaagttctatgaaatatttttcataccaaataaagttgt 60
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 796 ttaatcataaaaaaaaaattgtaagttctatgaaatatttttcataccaagtaaagttgt 737
Query: 61 ttgccaaatattttgtggcaggtgtgctgtttgttattctgtt-tacaaccccttttgtg 119
|||||||||||||||||||||||||||| |||||||||||||| | |||||||||
Sbjct: 736 ttgccaaatattttgtggcaggtgtgctatttgttattctgttat------ccttttgtg 683
Query: 120 aagagtggagattctggtaatgaattaagcacacatttaatactttctatgccagatgat 179
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 aagagaggagattctggtaatgaattaagcacacatttaatactttctatgccagatgat 623
Query: 180 ctgcataaattaatatctgcatagttttacatttgtataaccagtaaaaatgtaatgtat 239
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 622 ctgcataaattaatatctgcatagttttaaatttgtataaccagtaaaaatgtaatgtat 563
Query: 240 attgatgttacttcaaaaatagatgtgtgattctaatcctatgggagaagttgggttttt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 attgatgttacttcaaaaatagatgtgtgattctaatcctatgggagaagttgggttttt 503
Query: 300 taatttagttttcatcatcttttgaaagtttgctgcaatatcttaagcacccaggggaat 359
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 502 taatttacttttcatcatcttttgaaagtttgctgcaatatcttaagcacccagggaaat 443
Query: 360 aacgatactctttttaaaagggaaaaaaagaattaacagtagcctctaggacacagatga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aacgatactctttttaaaagggaaaaaaagaattaacagtagcctctaggacacagatga 383
Query: 420 gcacttaaacattttatataagactaaaacaaaagttagaagacactgagttttcaaatt 479
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 382 gcacttaaacattttatataagactaaaacaaaagttagaagacaccgagttttcaactt 323
Query: 480 caatttgaaagaaggtaggaaaatttaaaaagctcaagaggataaaatggcaatgcacaa 539
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 322 caatttgaaagaaggtaggaaaatttaaaaagctcaagaggataagatggcaatgcacaa 263
Query: 540 ttatcctggtagcaaatgtttcaatacttaaaaaaaaaatgtgaatggactaaactttct 599
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 262 ttatcctggtagcaaatgtttcaatactt-aaaaaaaaatgtgaatggactaaactttct 204
Query: 600 tat 602
|||
Sbjct: 203 tat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 996
Length adjustment: 10
Effective length of query: 592
Effective length of database: 986
Effective search space: 583712
Effective search space used: 583712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
