Query= MSMg01no512_c21.b1 MSMg01no512_c21.b1 CHROMAT_FILE:
MSMg01no512_c21.b1 PHD_FILE: MSMg01no512_c21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:15 2005
(667 letters)
>mm_chr5_7188572_7189638
Length = 1067
Score = 1205 bits (623), Expect = 0.0
Identities = 655/667 (98%), Gaps = 3/667 (0%)
Strand = Plus / Plus
Query: 1 aagttagcatatatctcaatactcaagggaggagcagcttaagtagatggctgataataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagttagcatatatctcaatactcaagggaggagcagcttaagtagatggctgataataa 260
Query: 61 agagacccacaactggtaactgaaaagagaagggactacagagcttgcagcttccattag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagacccacaactggtaactgaaaagagaagggactacagagcttgcagcttccattag 320
Query: 121 attttcctgctctcccttcaactgaaacagagccatggtaatacccaactgctccaaatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attttcctgctctcccttcaactgaaacagagccatggtaatacccaactgctccaaatt 380
Query: 181 ctacaacacatatgctgtacaatgtgatataaccaaaacactaaacccttccttttttac 240
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 ctacaacacatatgttgtacaatgtgatataaccaaagcactaaacccttccttttttac 440
Query: 241 ttcttattttattttgttttcacttttattggttattttatttatttaccttgaaaatgt 300
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 tttttattttattttgttttcacttttattggttattttatttatttacctttaaaatgt 500
Query: 301 tatccttcttcccagtttcccccccccacaagcctcccccactctgcctctattagggtg 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatccttcttcccagtt---cccccccacaagcctcccccactctgcctctattagggtg 557
Query: 361 ctccctcacccacgcacccacttgtgcctcagcaccctagcatttccctattctgggtca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ctccctcacccacgcacccacttgtgcctcagcaccctagcatttccctattctgggtca 617
Query: 421 tcaagcctcaaaaggaccaaggggctcccttcccagtgattccagataaggcaatcccct 480
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tcaagcctcaaaaagaccaaggggctcccttcccagtgattccagataaggcaatcccct 677
Query: 481 gctgcacatccagctgaggggcctaggacctgacagagaggacaataggggaaaggccca 540
|||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||
Sbjct: 678 gctgcacatccagctgagggtcctaggaactgacagggaggacaataggggaaaggccca 737
Query: 541 acaaaggggagagagaatctgtaaagaccatatccagtggaaaggcacagcccccaattg 600
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 738 acaaaggggagagagaatctgtaaagaccatatccagtggataggcacagcccccaattg 797
Query: 601 agggatggggccacacacccttctcaaaaatattaatgcagaatttctcatgtataaagg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 agggatggggccacacacccttctcaaaaatattaatgcagaatttctcatgtataaagg 857
Query: 661 aaatgta 667
|||||||
Sbjct: 858 aaatgta 864
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space: 694449
Effective search space used: 694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no512_c21.g1 MSMg01no512_c21.g1 CHROMAT_FILE:
MSMg01no512_c21.g1 PHD_FILE: MSMg01no512_c21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:15 2005
(534 letters)
>mm_chr5_7351144_7352077
Length = 934
Score = 1006 bits (520), Expect = 0.0
Identities = 529/532 (99%)
Strand = Plus / Minus
Query: 3 atagatccacctgcatctgcttcctggatgctggaattgaggtttgtgccaccgtactgg 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934 atagatccacctgcatctgcttcctggatgctggaattgaggtttgtgccaccgtactgg 875
Query: 63 gacctaaaatatttttgctactggttattttgaaagcatagattagaagaagaggctgag 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 gacctaaaatatttttgctactggttattttgaaagcatagattagaagaagaggctgag 815
Query: 123 aacttatttaaaaaataatgcaaattaaatatactgctttttttaatgaaaggtgtaagt 182
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 814 aacttatttaaaaaagaatgcaaattaaatatactgctttatttaatgaaaggtgtaagt 755
Query: 183 tatttatttaaaaataaaaacgaataatatcatatgaaagatacacaataataatttgtc 242
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 tatttatataaaaataaaaacgaataatatcatatgaaagatacacaataataatttgtc 695
Query: 243 ttctctgtagaactgtgagaaagagaaggggatttatgtaaatattagaactagtagaat 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 ttctctgtagaactgtgagaaagagaaggggatttatgtaaatattagaactagtagaat 635
Query: 303 ttgacatatatttcttaggattcatatgttaaaacaaaacttagtaagtaaacacttaaa 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 ttgacatatatttcttaggattcatatgttaaaacaaaacttagtaagtaaacacttaaa 575
Query: 363 ctgtgtgtatacacatgaacacatatactggataatttaaccatcttagtaacttaaatt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ctgtgtgtatacacatgaacacatatactggataatttaaccatcttagtaacttaaatt 515
Query: 423 ataaaacttcctttgccaccttaacatcaattgagatcctaatcacaaaattatttatga 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ataaaacttcctttgccaccttaacatcaattgagatcctaatcacaaaattatttatga 455
Query: 483 gtggctttaaatattaacaccatagaaatgtacaaaagtaaaaaatggtatt 534
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gtggctttaaatattaacaccatagaaatgtacaaaagtaaaaaatggtatt 403
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space: 484176
Effective search space used: 484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
