TTTGCGGGCGCTATACGACTCCTTTCGGGAGAGGATCCGCGGAATTCCTC
TTACGAGAAATACAGGTGGCGTTTGACAAGGTCAGGGAGAGCGCAGGAGA
CTGATCAGAAGCTCTGCTGGAGTCAGTGCCAGAGACCTTGGATGGCAGCT
TTGCTCTTACAGGCAGGAGCAAGCAGGGCTCTGAGCAAGAACTCAGTAAA
CAATAGAGAGTTCTGTGCAAAACCCACTCCTCATGGATCAAGCCATAAAC
AAACAGACAACTAACTAGGAGCTGCCACCAGCTTCCGCTCTCCTTGGAGC
AGGTGCCCCTGCTAGCCCTGCTCTCACAGATGTTACCAGTGCAACTCGCA
TCTCAACTATTGATCTCAGTTGTTGGGATACCTTGTTTCTGGTTTAGTCT
CAGTGAACACATCTCGTGGGAGTAAATTAGCACTTTATAAACCGCTGCAC
CCAGAAGCCAAACGCACCCCCCACCCCCACCCCCGCAGCTGATACAGGTG
AGTGGAAGAGGGAGCTGTCAGCCAGGGCTCTTTCTGATCTGCTGAGCCAG
AGGGGTTTATTCAGGGGTAAGTTTTTATGTTACAAGGTCTCACATGGCCC
AGGCTGGCCTCAAACTTGCTATGTAGCTAAAAATGACCTTGAACTTCTGA
TCCTCCTGCCTTCATCTTCCAAGATCTGAGGAGTTTATGTGGCACTGGGA
TGGAAGCTACCCTCTCTGTCCCACTGGACTCTGCCAACACGCCCCACCCC
CAATCCTGG

TGAGAGGCTGGCGGCGCCTTCCATAGAXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCCTGATGTGTACCCATACACATGCATACACACATG
CACACACACAATGCATATAANNCNNNNNCCNNNNNNTTTTGTGGGNNNNN
NNNNNNNNNNNTNCNNNNNNTNTTTTTTTTTNTNNNTNNNNNAAACAACA
TGNCATAATAACACACATGGCCATACACCAACATTGGGCCATTTACCAAC
AACCAATTATTGGCCAAAAAAACAAACACAAACAATTGGCAAAAAAAAAC
CAACCATTTTTTTCCAAAAAAAAAAAAAAAAAATTTGGGTAAAAAAAACA
AACCACAAAATTTTGTGAAAAAAACACCCAATGGAATAAATATGTTCAAA
AAAAAAAAACAATGGAAAAAATTGGTTGTGTTAAAAAAAAACAATGTGTT
ACAAACAAAATGTTGTTTTTTTTTATAATACACAAAAAAAACAAAGGATA
TAGGTAAGTGNTNTAGTTATATNATGNNCAAATGCGATTAATAANATNTA
TTAAAANAAAAAAAATAAAAATATAGTGTGACTATATACATACAAAAAAA
GAAAAGAAGGTGGTCCGTTTTTTTTTCTTCCTCTTTTCTTANCATTCTTT
GTATATAATAAATAAT

Query= MSMg01no512_d09.b1 MSMg01no512_d09.b1 CHROMAT_FILE:
MSMg01no512_d09.b1 PHD_FILE: MSMg01no512_d09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:17 2005
         (640 letters)



>mm_chr5_113200446_113201488
          Length = 1043

 Score = 1021 bits (528), Expect = 0.0
 Identities = 601/638 (94%), Gaps = 25/638 (3%)
 Strand = Plus / Plus

                                                                       
Query: 14  gaattcctcttac--gagaaatacaggtggcgtttgacaaggtcagggagagcgcaggag 71
           ||||||||||  |  |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 214 gaattcctct--cgggagaaatacaggtggcatttgacaaggtcagggagagcgcaggag 271

                                                                       
Query: 72  actgatcagaagctctgctggagtcagtgccagagaccttggatggcagctttgctctta 131
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 actgatcggaagctctgctggagtcagtgccagagaccttggatggcagctttgctctta 331

                                                                       
Query: 132 caggcaggagcaagcagggctctgagcaagaactcagtaaacaatagagagttctgtgca 191
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 332 caggcaggagcaagcagggctctgagcaagaactcagtaaacagtagagagttctgtgca 391

                                                                       
Query: 192 aaacccactcctcatggatcaagccataaacaaacagacaactaactaggagctgccacc 251
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 392 aaacccactcctcatggatcaagccataaacaaacagacaactaaccaggagctgccacc 451

                                                                       
Query: 252 agcttccgctc---tccttggagcaggtgcccctgctagccctgctctcacagatgttac 308
           |||||||||||   |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 452 agcttccgctcctctccttggagcaggtgcccctgctagcgctgctctcacagatgttac 511

                                                                       
Query: 309 cagtgcaactcgcatctcaactattgatctcagttgttgggataccttgtttctggttta 368
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 512 cagtgcaactcgcatctcaactatggatctcagttgttgggataccttgtttctggttta 571

                                                                       
Query: 369 gtctcagtgaacacatctcgtgggagtaaattagcactttataaaccgctgcacccagaa 428
           |||||||           ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 572 gtctcag-----------cgtgggagtaaattagcactttataaaacgctgcacccagaa 620

                                                                       
Query: 429 gccaaacgcaccccccacccccacc-----ccc--gcagctgatacaggtgagtggaaga 481
           |||||||||||||||||||||||||     |||  |||||||||||||||||||||| ||
Sbjct: 621 gccaaacgcaccccccacccccacctcacacccctgcagctgatacaggtgagtggagga 680

                                                                       
Query: 482 gggagctgtcagccagggctctttctgatctgctgagccagaggggtttattcaggggta 541
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 681 gggagctgtcagccagggctctttctgatctgctgagcctgaggggtttattcaggggta 740

                                                                       
Query: 542 agtttttatgttacaaggtctcacatggcccaggctggcctcaaacttgctatgtagcta 601
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agttcttatgttacaaggtctcacatggcccaggctggcctcaaacttgctatgtagcta 800

                                                 
Query: 602 aaaatgaccttgaacttctgatcctcctgccttcatct 639
           |||||||||||||| ||||||||||||||||| |||||
Sbjct: 801 aaaatgaccttgaatttctgatcctcctgcctgcatct 838


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1043
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1033
Effective search space:   650790
Effective search space used:   650790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)