Query= MSMg01no512_e13.b1 MSMg01no512_e13.b1 CHROMAT_FILE:
MSMg01no512_e13.b1 PHD_FILE: MSMg01no512_e13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:23 2005
(546 letters)
>mm_chr5_4848978_4849923
Length = 946
Score = 973 bits (503), Expect = 0.0
Identities = 539/559 (96%), Gaps = 13/559 (2%)
Strand = Plus / Plus
Query: 1 tgacacaagcaaagacacatggtctattatctctcatagcctcttgtttttattctcttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 tgacacaagcaaagacacatggtctattatctctcatagcctcttgtttttattctcttc 247
Query: 61 tcttgaaaaaggacttcagacttcctgcagagtatcccattcccctactctcaggaagga 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 248 tcttgaaaaaggacttcagacttcctgcagagtgtcccattcccctactctcaggaagga 307
Query: 121 agagctcatttctatacctatacaaaatatttctccacacaaacatattatcttacataa 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 agagctcatttctatatctatacaaaatatttctccacacaaacatattatcttacataa 367
Query: 181 ggggaattctgatcatgtctattaaacagtgtaaaggtgtctccccagtgcttgaactta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggggaattctgatcatgtctattaaacagtgtaaaggtgtctccccagtgcttgaactta 427
Query: 241 tattcaaaactctggtgtgtatggtcaacaacctagaaacccagagctcacccaaactta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tattcaaaactctggtgtgtatggtcaacaacctagaaacccagagctcacccaaactta 487
Query: 301 ccagacctgctgaagtgtctctaagctcactcattatctgagggtgaagatgtcagtgcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ccagacctgctgaagtgtctctaagctcactcattatctgagggtgaagatgtcagtgcc 547
Query: 361 tgaaagcacgcccattaacacatcccagaatccatcacaagccacactcccatcccaggc 420
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 548 tgaaagcacgcccattaacacatcccagaatccatcacaagccacattcccatcccaggc 607
Query: 421 cctttatgtttgtcact-------------cacagtcttccctttctctggcacttttca 467
||||||||||||||||| |||| |||| |||||||| |||||||||||
Sbjct: 608 cctttatgtttgtcactgtagtaggccactcacaatctttcctttctccggcacttttca 667
Query: 468 atgcaacttgttttatcttggaaaggacattaactttcagtgaaaacatcatggaaatta 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 668 atgcaacttgttttatcttggaaaggacattaactttcagtgaaaacatcatggagatta 727
Query: 528 aaggatgtttcaaattcta 546
|||||||||||||||||||
Sbjct: 728 aaggatgtttcaaattcta 746
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space: 501696
Effective search space used: 501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no512_e13.g1 MSMg01no512_e13.g1 CHROMAT_FILE:
MSMg01no512_e13.g1 PHD_FILE: MSMg01no512_e13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:23 2005
(606 letters)
>mm_chr5_4896809_4897808
Length = 1000
Score = 1054 bits (545), Expect = 0.0
Identities = 589/607 (97%), Gaps = 8/607 (1%)
Strand = Plus / Minus
Query: 1 ttaatcataaaaaaaaatttgtaagttctatgaaatatttttcataccaaataaagttgt 60
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 800 ttaatcataaaaaaaaaattgtaagttctatgaaatatttttcataccaagtaaagttgt 741
Query: 61 ttgccaaatattttgtggcaggtgtgctgtttgttattctgtt-tacaaccccttttgtg 119
|||||||||||||||||||||||||||| |||||||||||||| | |||||||||
Sbjct: 740 ttgccaaatattttgtggcaggtgtgctatttgttattctgttat------ccttttgtg 687
Query: 120 aagagtggagattctggtaatgaattaagcacacatttaatactttctatgccagatgat 179
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 aagagaggagattctggtaatgaattaagcacacatttaatactttctatgccagatgat 627
Query: 180 ctgcataaattaatatctgcatagttttacatttgtataaccagtaaaaatgtaatgtat 239
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 626 ctgcataaattaatatctgcatagttttaaatttgtataaccagtaaaaatgtaatgtat 567
Query: 240 attgatgttacttcaaaaatagatgtgtgattctaatcctatgggagaagttgggttttt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 attgatgttacttcaaaaatagatgtgtgattctaatcctatgggagaagttgggttttt 507
Query: 300 taatttagttttcatcatcttttgaaagtttgctgcaatatcttaagcacccaggggaat 359
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 506 taatttacttttcatcatcttttgaaagtttgctgcaatatcttaagcacccagggaaat 447
Query: 360 aacgatactctttttaaaagggaaaaaaagaattaacagtagcctctaggacacagatga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aacgatactctttttaaaagggaaaaaaagaattaacagtagcctctaggacacagatga 387
Query: 420 gcacttaaacattttatataagactaaaacaaaagttagaagacactgagttttcaaatt 479
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 386 gcacttaaacattttatataagactaaaacaaaagttagaagacaccgagttttcaactt 327
Query: 480 caatttgaaagaaggtaggaaaatttaaaaagctcaagaggataaaatggcaatgcacaa 539
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 326 caatttgaaagaaggtaggaaaatttaaaaagctcaagaggataagatggcaatgcacaa 267
Query: 540 ttatcctggtagcaaatgtttcaatacttaaaaaaaaaatgtgaatggactaaactttct 599
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 266 ttatcctggtagcaaatgtttcaatactt-aaaaaaaaatgtgaatggactaaactttct 208
Query: 600 tattaag 606
|||||||
Sbjct: 207 tattaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1000
Length adjustment: 10
Effective length of query: 596
Effective length of database: 990
Effective search space: 590040
Effective search space used: 590040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
