Query= MSMg01no512_m11.b1 MSMg01no512_m11.b1 CHROMAT_FILE:
MSMg01no512_m11.b1 PHD_FILE: MSMg01no512_m11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:03 2005
(649 letters)
>mm_chr5_30174422_30175471
Length = 1050
Score = 1203 bits (622), Expect = 0.0
Identities = 643/650 (98%), Gaps = 1/650 (0%)
Strand = Plus / Minus
Query: 1 aagtccatctacttgaaggagaatcatggggcttagcactgtacctagtgcatgaattaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 aagtccatctacttgaaggagaatcatggggcttagcactgtacctagtgcatgaattaa 724
Query: 61 gatagcagtggtcctcaaaaatgtggaagaatacaaggaaaggttttattatagcaacag 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 gatagcaatggtcctcaaaaatgtggaagaatacaaggaaaggttttattatagcaacag 664
Query: 121 gaaggaaacaggtctccaacctaaggagatggtgcttcaaatattgtga-ttttttccag 179
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 663 gaaggaaacaggtctccaacctaaggagatggtgcttcaaatattgtgatttttttccag 604
Query: 180 ggtccagagtatcagattcacttgtgcagaaggataagtacaaagccacgtggatctggt 239
||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 603 ggttcagagtatcagattcacttgtgcagaaggataagtacaaagccacatggatctgtt 544
Query: 240 ttttaacaaatctgccaaatcagtttaaataagacctggttagcacattgtgaagagttc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ttttaacaaatctgccaaatcagtttaaataagacctggttagcacattgtgaagagttc 484
Query: 300 cagtgatggttgtgtcatcagaaatgcttggaatgcttagatatctctttttagtgagaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 cagtgatggttgtgtcatcagaaatgcttggaatgcttagatatctctttttagtgagaa 424
Query: 360 gaaattctgagaatcggagaagccagatgcagggaatttccaggattctgaggctaaaca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gaaattctgagaatcggagaagccagatgcagggaatttccaggattctgaggctaaaca 364
Query: 420 caagaatgccaactctgtatgttttgatcatattcctttgaaatgggtgtctcctcacgc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 caagaatgccaactctgtatgttttgatcatattcctttgaaatgggtgtctcctcacgc 304
Query: 480 cttcactcttctttcttgctgcttttataagtggaactgtgtcttatccactacatccct 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 cttcactcttctttcttgctgcttttataagtggaactgtgtcttatccactacatccct 244
Query: 540 aactcagacattaaagtgttagccctactttctacagaacatcaacccagtaagattggt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 aactcagacattaaagtgttagccctactttctacagaacatcaacccagtaagattggt 184
Query: 600 gttcttataagaatgggaaattcagacccatgaacacatacagagaaaga 649
|||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 183 gttcttataagaatggcaaattcagacccacgaacacatacagagaaaga 134
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1050
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1040
Effective search space: 664560
Effective search space used: 664560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no512_m11.g1 MSMg01no512_m11.g1 CHROMAT_FILE:
MSMg01no512_m11.g1 PHD_FILE: MSMg01no512_m11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:03 2005
(607 letters)
>mm_chr5_29992329_29993335
Length = 1007
Score = 1174 bits (607), Expect = 0.0
Identities = 607/607 (100%)
Strand = Plus / Plus
Query: 1 tcacaggaaagtgattgaaatggtgaactttatgttgtatgttttaccacaaaataaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcacaggaaagtgattgaaatggtgaactttatgttgtatgttttaccacaaaataaaaa 260
Query: 61 aataattctggggctgaagagatgactcagtgtataaagtgttcttgctgctgggcctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aataattctggggctgaagagatgactcagtgtataaagtgttcttgctgctgggcctga 320
Query: 121 gaacctgagtttgatcccagggatccacatggcaggaaaagaaccacagacacaataaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaacctgagtttgatcccagggatccacatggcaggaaaagaaccacagacacaataaat 380
Query: 181 aaacaaatgtactttttaaattaagaaaaagaaatccaagctagatgtagtcctcaagag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaacaaatgtactttttaaattaagaaaaagaaatccaagctagatgtagtcctcaagag 440
Query: 241 actgaggtaagatttctgtgttaaaggcaaatctggactgtataaagtgaggccaggagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actgaggtaagatttctgtgttaaaggcaaatctggactgtataaagtgaggccaggagc 500
Query: 301 caggtggaaagggaagagaagagaaaagagaagaaaatacccagctaaagttcctgtgtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caggtggaaagggaagagaagagaaaagagaagaaaatacccagctaaagttcctgtgtt 560
Query: 361 cagttaaaaggcattttgtatgcaccatctgtggagttagagacagaaggtcagaggtgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagttaaaaggcattttgtatgcaccatctgtggagttagagacagaaggtcagaggtgt 620
Query: 421 ctgtaggagctttgtgagaaaaatggaaatgttctaaatatggatgtgctagtgattcta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgtaggagctttgtgagaaaaatggaaatgttctaaatatggatgtgctagtgattcta 680
Query: 481 aatttactaaaaatcacttaaatttgcattgatgtgtgtgcattttatttcttctgtaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aatttactaaaaatcacttaaatttgcattgatgtgtgtgcattttatttcttctgtaat 740
Query: 541 tgctgttgctctaaacctgaactctaattttatataaaaacaaataatgccacaggtcat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgctgttgctctaaacctgaactctaattttatataaaaacaaataatgccacaggtcat 800
Query: 601 agtgtct 607
|||||||
Sbjct: 801 agtgtct 807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space: 595209
Effective search space used: 595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
