Query= MSMg01no513_a13.b1 MSMg01no513_a13.b1 CHROMAT_FILE:
MSMg01no513_a13.b1 PHD_FILE: MSMg01no513_a13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:24 2005
(705 letters)
>mm_chr5_106809375_106810476
Length = 1102
Score = 1073 bits (555), Expect = 0.0
Identities = 598/613 (97%), Gaps = 3/613 (0%)
Strand = Plus / Minus
Query: 5 gaattccagtgtgcctaaaaaccaaacaaagctagttcagaggacagaggggaggctgga 64
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 gaattccagtggggctaaaaaccaaacaaagctagttcagaggacagaggggaggctgga 551
Query: 65 acagttcactgctgctgctgggattgaggctcggtcttcttcagcacccgagtggaccag 124
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 acagttcac--c-gctgctgggattgaggctcggtcttcttcagcacccgagtggaccag 494
Query: 125 atgatgggagtcccaggtcaagggtgcctgagaaactattgtccaggcctggccagggac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 atgatgggagtcccaggtcaagggtgcctgagaaactattgtccaggcctggccagggac 434
Query: 185 acggtgggaaggaacatggtgactgttttctacctccttggggttgttctcttcttggaa 244
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 atggtgggaaggaacatggtgactgttttctacctccttggggttgttctcttcttggaa 374
Query: 245 gagaaggaaggggtcagggtcacatgataatgggacaaactaccctgtcacattaaaatt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gagaaggaaggggtcagggtcacatgataatgggacaaactaccctgtcacattaaaatt 314
Query: 305 ggcaaggttggtggtactgactatatactaaagcatggggagaaaatttaaaatgtagct 364
|||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||
Sbjct: 313 ggcaaggttggtggtactgattatatactaaaacatggggagaaaacttaaaatgtagct 254
Query: 365 taactatgaaaaagcaataaatggctaactctttaaatggtctcccagatgagatagggg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 taactatgaaaaagcaataaatggctaactctttaaatggtctcccagatgagatagggg 194
Query: 425 attgctgtgtagcccaactggccttgaactcactacaggctggcctcaaacttctggtct 484
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 193 attgctgtgtagcccaactggccttgaactcactacaggctggcctcaaaattctggtct 134
Query: 485 ttctgagtcatatgtctaagtactgagattataagtatatagcatcacacctaggaacat 544
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 133 ttctgagtcatatgtccaagtactgagattataagtatatagcatcacacctaggatcat 74
Query: 545 ttattatttgagtccaattatagttggatttgtatgaaaatattagttcctcttccttcc 604
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 73 ttattatttgagtccaattatagttggatttgtatgaaaatattagttcctctttctttc 14
Query: 605 ttcctttctttct 617
|| ||||||||||
Sbjct: 13 tttctttctttct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 705
Length of database: 1102
Length adjustment: 10
Effective length of query: 695
Effective length of database: 1092
Effective search space: 758940
Effective search space used: 758940
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no513_a13.g1 MSMg01no513_a13.g1 CHROMAT_FILE:
MSMg01no513_a13.g1 PHD_FILE: MSMg01no513_a13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:24 2005
(666 letters)
>mm_chr5_106655837_106656902
Length = 1066
Score = 1249 bits (646), Expect = 0.0
Identities = 661/666 (99%)
Strand = Plus / Plus
Query: 1 aggaggaatttccatgaaacaggacttttgaaaaacatggatcctggatgctgattttgt 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 aggaggaatttccatgaaacaggacttttgaaaaacatggattctggatgctgattttgt 260
Query: 61 ttggctagggagatgtcagagccagaagtttactgactgttaattacagatcctcccagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggctagggagatgtcagagccagaagtttactgactgttaattacagatcctcccagc 320
Query: 121 atggcatcaaaaatgtctgtgtagagtggacggaagcaattacagattacacccgaggtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atggcatcaaaaatgtctgtgtagagtggacggaagcaattacagattacacccgaggtt 380
Query: 181 ggccacctagccttctatgataggaaaaggattaagtctttaggctacatttgcccagga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggccacctagccttctatgataggaaaaggattaagtctttaggctacatttgcccagga 440
Query: 241 gcatatgtttgtatgacttgcaaaagatagtccagggggtgtttacactggggtcaaagg 300
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcataggtttgtatgacttgcaaaagatagtccagggggtgtttacactggggtcaaagg 500
Query: 301 gcttttaaagacattatatccttccctttcttctttgagagctgaagccatttcccactc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcttttaaagacattatatccttccctttcttctttgagagctgaagccatttcccactc 560
Query: 361 ctcccagcatgcctcgtagtcctgattctgttccacaaggtctgtaccagggaccctcac 420
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 561 ctcccagcatgcctcgtagtcctgattttgttccacaaggtctgtaccagggaccctcac 620
Query: 421 actgagaaggaaatggggtactatgaaaaataacctgctacttcccatagagcccaatgg 480
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 621 actgagaaggaaatggggtactatgaaaaataacctgctactccccatagagcccaatgg 680
Query: 481 cacattcccatgtgtccagtgtgtgacatcaactgtgtagaaataagcaacactagggga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cacattcccatgtgtccagtgtgtgacatcaactgtgtagaaataagcaacactagggga 740
Query: 541 agtacccatgtcaaaactcttgccaaggaacaaagcccatcaggggacagcaaagctttc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agtacccatgtcaaaactcttgccaaggaacaaagcccatcaggggacagcaaagctttc 800
Query: 601 agagggacattggagatgggcaaagtcagaagggataaagcccctgggatcctttagtct 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 agagggacattggagatgggcaaagtcagaagggataaagcccctgggatcctttagtct 860
Query: 661 tgagaa 666
||||||
Sbjct: 861 tgagaa 866
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space: 692736
Effective search space used: 692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
