BAC Information

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BAC

Clone NameMSMg01-513E13
Chromosome5 (Build37)
Map Location 16,062,649 - 16,231,348
singlet/doubletdoublet
Overlap geneHgf
Upstream geneSpeer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121
Downstream geneEG668131, LOC626390, LOC668142, LOC100041749, LOC100041832, Speer4f, EG630927, Sema3c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-513E13.T7 (MSMg01no513_e13.b1)MSMg01-513E13.TJ (MSMg01no513_e13.g1)
ACCAG586040AG586041
length768780
length of high quality
(start - end)		622 (37 - 658)650 (67 - 716)
definitionCHROMAT_FILE: MSMg01no513_e13.b1 PHD_FILE: MSMg01no513_e13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:43 2005CHROMAT_FILE: MSMg01no513_e13.g1 PHD_FILE: MSMg01no513_e13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,062,649 - 16,063,267)(16,230,786 - 16,231,348)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGA
AATGGAAATAGAAAAGGGGAAGACTTCAAAGCTCACCATGATCAATTTAT
TCTATATAATATCCTAGAGAGAAAAATTATGTTGCTTCTTAGCTGCCAAT
ACTTGATCTAAATCTACCAAGTCTCCTCTGTGTCATTGTCTTCACTTACC
ATGAGGTTAGCTTCTCCTAGGGGGAGTGCATTACTGTCAGAGTGAAGTCT
GAATCCTAGATAATATCAGTGGAAACTGCAGCATCTTTTAGGGATCCTTG
TCTTTAGGGGTTAAAAATCTCCAGTCACAAACCATTGCCTCCTCCCTTCA
ATTACTTGTAGACTTTCATCTTAACATCTTGCCAGTTCAAACTGTTAATC
ACGAATCATGTGGGTAGTTTTTTCAGTTATGGGGAACCAGATTCCTGCTC
TTTCCACACCGTGCAAATCCTTGCTTTGCATGAATTTCCTTTGAAGTCCA
TGGTTCTTCCACACAGAAGAAAATATATGAGGTACTGAGAGAAGCGAGTG
TGAGGCCCAGGGACCAGAGGGAGAAATGTGTCTGTCTTCAACCACCTTGA
TATGTTTGACCCTGTTTTCTGTTTATAGCTTTTCACCAGAATCCTGATGG
TCTCAGTTCTAAAATAGAAGACTTCAGGTTCTTCGAGAAACATAATTCCA
GAATGTTTTCCTAAGCTCGAGAAGAGAAAGGAACATAATTTTAAATATTG
GATAGCTAGACAAATTAC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXACTATAGGATATCTAATCTATAGTAAAGACAAAC
CTAAAATAACTTTTTGAATGCTCATAATTGCATTCCCCATAATGAGAACA
AATCATTTGTCAGTTTAATGTCAAAATGCAGACAGTAATACTAAGTGCTG
AAAGTAAAAAACAGCAACAGTGAATGTGTAGGTATTAAGAAGTAATAATT
TCAAGGTATTCATACTGTCATAACAAGGCCAGTTAGGCTAGCGTTAAAAC
ACGGGTAGGGGTTTGGAGGATTGTGGATATATTAGGGCAAGTGTGAAGAT
AAAATCAGAAGCTGTATATTGAGAAGTTAATACTCAATTAGATGCTTGTT
GAGTACTTCAGGAAATATAGTAAATCTATTATTAAAATATCTAATTTTCC
AACTAACAGTATAATGTCCATTTTTATTCCCATTGTATAGAGGAAAGTAC
TTGGCACAGAGAGTTTAAACACTTTCCCAGCATTACATACTTAGCAATCA
GAAGACTAGGAATTGAAATGGGTCCAGAGGATATTTTCTTAGCCAAAGAG
TTTTACAGTCTCACTGACTAGACTGCTGAGCTATGCTAAGGATTTAATAT
TATTTTAAGTTTTCTTTATTCTCAAGGCATTTTCAAAATTGGCATGAGAG
GATACTAAAATTCTGATGGAGAGAGGCAAACAGCATGATAAGTTTTTTAA
GACATTCAATTGTACATTGGTGAGTAGAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no513_e13.b1 MSMg01no513_e13.b1 CHROMAT_FILE:
MSMg01no513_e13.b1 PHD_FILE: MSMg01no513_e13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:43 2005
         (622 letters)



>mm_chr5_16062446_16063467
          Length = 1022

 Score = 1166 bits (603), Expect = 0.0
 Identities = 615/619 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccagaaatggaaatagaaaaggggaagacttcaaagctcaccatgatcaattta 63
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccagaaaaggaaatagaaaaggggaagacttcaaagctcaccatgatcaattta 263

                                                                       
Query: 64  ttctatataatatcctagagagaaaaattatgttgcttcttagctgccaatacttgatct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttctatataatatcctagagagaaaaattatgttgcttcttagctgccaatacttgatct 323

                                                                       
Query: 124 aaatctaccaagtctcctctgtgtcattgtcttcacttaccatgaggttagcttctccta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaatctaccaagtctcctctgtgtcattgtcttcacttaccatgaggttagcttctccta 383

                                                                       
Query: 184 gggggagtgcattactgtcagagtgaagtctgaatcctagataatatcagtggaaactgc 243
           |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 384 gggggagtacattactgtcagagtgaagtctgaatcctagataataacagtggaaactgc 443

                                                                       
Query: 244 agcatcttttagggatccttgtctttaggggttaaaaatctccagtcacaaaccattgcc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agcatcttttagggatccttgtctttaggggttaaaaatctccagtcacaaaccattgcc 503

                                                                       
Query: 304 tcctcccttcaattacttgtagactttcatcttaacatcttgccagttcaaactgttaat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tcctcccttcaattacttgtagactttcatcttaacatcttgccagttcaaactgttaat 563

                                                                       
Query: 364 cacgaatcatgtgggtagttttttcagttatggggaaccagattcctgctctttccacac 423
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 564 cacgaatcatgtgggtagttttttcagttatggggaaccagattcctgctttttccacac 623

                                                                       
Query: 424 cgtgcaaatccttgctttgcatgaatttcctttgaagtccatggttcttccacacagaag 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cgtgcaaatccttgctttgcatgaatttcctttgaagtccatggttcttccacacagaag 683

                                                                       
Query: 484 aaaatatatgaggtactgagagaagcgagtgtgaggcccagggaccagagggagaaatgt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aaaatatatgaggtactgagagaagcgagtgtgaggcccagggaccagagggagaaatgt 743

                                                                       
Query: 544 gtctgtcttcaaccaccttgatatgtttgaccctgttttctgtttatagcttttcaccag 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gtctgtcttcaaccaccttgatatgtttgaccctgttttctgtttatagcttttcaccag 803

                              
Query: 604 aatcctgatggtctcagtt 622
           |||||||||||||||||||
Sbjct: 804 aatcctgatggtctcagtt 822


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space:   619344
Effective search space used:   619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no513_e13.g1 MSMg01no513_e13.g1 CHROMAT_FILE:
MSMg01no513_e13.g1 PHD_FILE: MSMg01no513_e13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:43 2005
         (650 letters)



>mm_chr5_16230786_16231835
          Length = 1050

 Score = 1073 bits (555), Expect = 0.0
 Identities = 561/563 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actataggatatctaatctatagtaaagacaaacctaaaataactttttgaatgctcata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 actataggatatctaatctatagtaaagacaaacctaaaataactttttgaatgctcata 504

                                                                       
Query: 61  attgcattccccataatgagaacaaatcatttgtcagtttaatgtcaaaatgcagacagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 attgcattccccataatgagaacaaatcatttgtcagtttaatgtcaaaatgcagacagt 444

                                                                       
Query: 121 aatactaagtgctgaaagtaaaaaacagcaacagtgaatgtgtaggtattaagaagtaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aatactaagtgctgaaagtaaaaaacagcaacagtgaatgtgtaggtattaagaagtaat 384

                                                                       
Query: 181 aatttcaaggtattcatactgtcataacaaggccagttaggctagcgttaaaacacgggt 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 383 aatttcaaggtattcatactgtcataacaaggccagttaggctagcattaaaacacgggt 324

                                                                       
Query: 241 aggggtttggaggattgtggatatattagggcaagtgtgaagataaaatcagaagctgta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aggggtttggaggattgtggatatattagggcaagtgtgaagataaaatcagaagctgta 264

                                                                       
Query: 301 tattgagaagttaatactcaattagatgcttgttgagtacttcaggaaatatagtaaatc 360
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tattgagaaggtaatactcaattagatgcttgttgagtacttcaggaaatatagtaaatc 204

                                                                       
Query: 361 tattattaaaatatctaattttccaactaacagtataatgtccatttttattcccattgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tattattaaaatatctaattttccaactaacagtataatgtccatttttattcccattgt 144

                                                                       
Query: 421 atagaggaaagtacttggcacagagagtttaaacactttcccagcattacatacttagca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 atagaggaaagtacttggcacagagagtttaaacactttcccagcattacatacttagca 84

                                                                       
Query: 481 atcagaagactaggaattgaaatgggtccagaggatattttcttagccaaagagttttac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83  atcagaagactaggaattgaaatgggtccagaggatattttcttagccaaagagttttac 24

                                  
Query: 541 agtctcactgactagactgctga 563
           |||||||||||||||||||||||
Sbjct: 23  agtctcactgactagactgctga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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