BAC Information

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BAC

Clone NameMSMg01-513H12
Chromosome5 (Build37)
Map Location 108,880,415 - 108,880,790
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC72342, 1700028K03Rik, Glmn, AW060207, Gfi1, LOC100042473, Evi5, 1700013N18Rik, Rpl5, 2900024C23Rik, LOC675566, Mtf2, Tmed5, Ccdc18, EG633606, LOC666614, Dr1, Pigg, Pde6b, Atp5k, Mfsd7
Downstream genePcgf3, LOC100042557, Cplx1, LOC100042571, Gak, Tmem175, Dgkq, Idua, Slc26a1, LOC100042616, Fgfrl1, LOC671564, 1810008K16Rik, EG627479, EG435864, EG667087, LOC100041615, V2r16, LOC545792, EG384219, Vmn2r12, LOC231589, EG231591, LOC667128, EG211223, EG384220, EG636052, EG384221
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-513H12.T7 (MSMg01no513_h12.b1)MSMg01-513H12.TJ (MSMg01no513_h12.g1)
ACCAG586182AG586183
length755769
length of high quality
(start - end)		532 (37 - 568)621 (67 - 687)
definitionCHROMAT_FILE: MSMg01no513_h12.b1 PHD_FILE: MSMg01no513_h12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:59 2005CHROMAT_FILE: MSMg01no513_h12.g1 PHD_FILE: MSMg01no513_h12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAATA
TTTACGGGAGCATTACTAGAGGGAGTGATCACACTGGCAGACAGGAAGCC
AGAGTGAGTGGAGAGGGCAAAGTTTCTAGCACGATAACACTTGGGAAACA
CACCCAGATCAGAGCAAACCATTACAAATGGAAGCACACAGTATATAACC
TTTTTTTTTTTTTTTTTTTTTTTTGAGACAGGGTTTCTCTGTATAGCCCT
GGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTTGAACTCAGAAA
TCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGAGCCACCA
CTGCTTTTATCCCCTCGCTTTGCCTATCCAGGTTGCTGTACGTATTAGCT
CTTCATTCCTGAGTAAACTAGTCCATGGTGCCTATACTTCTGTTTACTCG
ACTGATCACTGACTGAAGGACACCTGGGTGTTTACACTGTCTTTGATGAT
CACAAAATGAAGCTGCTGCAGGTTTTTCTCTCTCGTGGATAAAGACTCAT
GACTGCTTCGGCTGAGTTAGACCATAGCTACATTCTTGGTTTTACAAGAA
ACTGCCAACTTGTTTTCTATAGACTTCAACATTTAGAATTGTCAGGACTT
TTATTTAACACTCTAAAAAAATATGGGATTAGCTCATTGTGGGTTGGTTG
GTTTTGCTTTTGGTTTGCTCGCTTGTTTTTTGAATAGGGTTTCTCTGTGT
AGACC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTGTCTGTATTCTGTGGTGTCCTGCCTGCGGCTC
ACATGTCTGGGTTCTAGTCTGGAAAGGCATCTTGGAAGCCTGGAAGAGAA
GAGGGAGCTAGGCGGGCAAGAGAAAGATGTAGCTAAGACAGTCATTCTGA
TCAAAGCTCAATTTTTTATTTCTGACACTCAGTTATGAAGGAGGGGAAGG
GGCCCAATTCCCGCCAAATAATCCTGGAGTCCAGTAGCAGGGTGACCACG
TGTATGGCTCTGGAACAGCAAAGCGGCAGGCTCCAGCAGTGGGCATGGCA
GAACGATTGAGCGGCAAGCTCCACCCCAATGTAAACAGTGAAACCTGAGC
AAGCAGGTTTCAGGCTGGGGAGGGGAGGCTACATCTCCTCCCTGTTGTTA
ATAAAAAAAGAAAAGGCTGGCCTGAGACATAAAATTTATTTATGCCCTAT
AGTTCTGGCTGAATTTTAGGGCCTAATGAAGAAACCTGTCTCAGTGGGAT
TTCCTAACTTTTCTTATGGTAAACCATATCTGGATAAGACTGTCTTTTTT
GTCCTAGTAAGCAACTAGCAGATTAGCCCTGAGCTGTAGGCTCTGACTTT
TATAATGCTAATTAGTACTGAATAGGTAACTTCCTAGNNTGATTNNNNNN
NNTNNNNTTTTTTTTTTTACTGGAAAANGGAGAGGTTACTACCAAGGCTT
TCTAGGGGGTTGGACCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no513_h12.b1 MSMg01no513_h12.b1 CHROMAT_FILE:
MSMg01no513_h12.b1 PHD_FILE: MSMg01no513_h12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:59 2005
         (532 letters)



>mm_chr5_108880415_108881346
          Length = 932

 Score =  677 bits (350), Expect = 0.0
 Identities = 371/378 (98%), Gaps = 4/378 (1%)
 Strand = Plus / Minus

                                                                       
Query: 20  gggagcattactagagggagtgatcacactggcagacaggaagccagagtgagtggagag 79
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gggagcattactagagggagtgatcacactggcagacaggaagccagagtgagtggagag 317

                                                                       
Query: 80  ggcaaagtttctagcacgataacacttgggaaacacacccagatcagagcaaaccattac 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ggcaaagtttctagcacgataacacttgggaaacacacccagatcagagcaaaccattac 257

                                                                       
Query: 140 aaatggaagcacacagtatataaccttttttttttttttttttttttttgagacagggtt 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 aaatggaagcacacagtatataaccttttttttttttttttttttttttgagacagggtt 197

                                                                       
Query: 200 tctctgtatag-ccctggctgtcctggaactcactttgtagaccaggctggccttgaact 258
           ||||||||||| |||  |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 196 tctctgtatagtccc-agctgtcctggaactcactctgtagaccaggctggccttgaact 138

                                                                       
Query: 259 cagaaatccgcctgcctctgcctcccaagtgctgggattaaaggcgtg-agccaccactg 317
           |||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||
Sbjct: 137 cagaaatccgcctgcctctgcctcccaagtgctgggattaaaggtgtgca-ccaccactg 79

                                                                       
Query: 318 cttttatcccctcgctttgcctatccaggttgctgtacgtattagctcttcattcctgag 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78  cttttatcccctcgctttgcctatccaggttgctgtacgtattagctcttcattcctgag 19

                             
Query: 378 taaactagtccatggtgc 395
           ||||||||||||||||||
Sbjct: 18  taaactagtccatggtgc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space:   481284
Effective search space used:   481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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