BAC Information

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BAC

Clone NameMSMg01-513K22
Chromosome5 (Build37)
Map Location 41,502,327 - 41,502,803
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040502
Downstream geneLOC208522, Rab28, Bapx1, A230054D04Rik, LOC384308, LOC100040588
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-513K22.T7 (MSMg01no513_k22.b1)MSMg01-513K22.TJ (MSMg01no513_k22.g1)
ACCAG586346
length767769
length of high quality
(start - end)
---478 (69 - 546)
definitionCHROMAT_FILE: MSMg01no513_k22.b1 PHD_FILE: MSMg01no513_k22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:44:16 2005CHROMAT_FILE: MSMg01no513_k22.g1 PHD_FILE: MSMg01no513_k22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:44:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXG
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTGACCTCACTATGGAAAAGCCAGGGAAACCA
TGTAGTTTTGGGATATGTTACAAAAACTTAACATTTCTGTAACAAAATAC
CTTATACTAAATAGTTTATAAGCAATAGACATTTCTTTTTTTGGCCTCTT
TGTTAAGAATATTCATCATATTCTTAAAGATACAGCTTTGGACGATACTG
TAAGGGTTGGATTTCCACATATGACTTGGGGAGAGTGGAGTCATCAGACA
ATTCTTTACAGCAGAGAATATCCTGTGTCTTCTGCCTCCTCTATGCTTTT
AAGGTTAGGATGTTGGAACTCAAGATATTATTAAGCTGCCATTTAGCAGG
TCTATGACCACACAGTCCCTCTGAATGATGATTTACCCGCATATAAAATG
GTGGCATAAAAGTCTCTAACACATTGGATTTTATAGGAAACAACTAAAGC
CAAGAATAGAAAAAACAAACTGTAAATTACAAAGTAGTCTTTAAGTAGAT
GGTGGGGTGCTAGTCCACAGATTGGACCTGTTGGCAGATAGATATAAGAA
GTCAGTGATCAGCCCTCACATGATCAAGACAGCCCTGGCCCTGGAAATGT
TGGCATATGCTCATTTTACTCTATGATGGGAAAAAGGATAAATAAATCCT
AAATGATTAAATTAGGCGTCCCTCTGTGGCTCCCGTAAAAGCTCAAAGCC
CCCACCCACCAGCGGATCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no513_k22.g1 MSMg01no513_k22.g1 CHROMAT_FILE:
MSMg01no513_k22.g1 PHD_FILE: MSMg01no513_k22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:16 2005
         (478 letters)



>mm_chr5_41502126_41503003
          Length = 878

 Score =  824 bits (426), Expect = 0.0
 Identities = 465/478 (97%), Gaps = 1/478 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgacctcactatggaaaagccagggaaaccatgtagttttgggatatgttacaaaaact 60
           |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 202 ctgatctcactatggaaaagccagggaaaccatgtag-tttgggatatgttacaaaaact 260

                                                                       
Query: 61  taacatttctgtaacaaaataccttatactaaatagtttataagcaatagacatttcttt 120
           |||| ||||||||||||||||||||| |||| |||||||||| |||||||||||||||||
Sbjct: 261 taacgtttctgtaacaaaataccttagactagatagtttataggcaatagacatttcttt 320

                                                                       
Query: 121 ttttggcctctttgttaagaatattcatcatattcttaaagatacagctttggacgatac 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 321 ttttggcctctttgttaagaatatccatcatattcttaaagatacagctttggacaatac 380

                                                                       
Query: 181 tgtaagggttggatttccacatatgacttggggagagtggagtcatcagacaattcttta 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtaagggttgaatttccacatatgacttggggagagtggagtcatcagacaattcttta 440

                                                                       
Query: 241 cagcagagaatatcctgtgtcttctgcctcctctatgcttttaaggttaggatgttggaa 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 tagcagagaatatcctgtgtcttctgcctcctctatgcttttaaggttaggaggttggaa 500

                                                                       
Query: 301 ctcaagatattattaagctgccatttagcaggtctatgaccacacagtccctctgaatga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcaagatattattaagctgccatttagcaggtctatgaccacacagtccctctgaatga 560

                                                                       
Query: 361 tgatttacccgcatataaaatggtggcataaaagtctctaacacattggattttatagga 420
           |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 561 tgatttacccacatataaaatggtggcataaaagtctctaacacattggcttttatagga 620

                                                                     
Query: 421 aacaactaaagccaagaatagaaaaaacaaactgtaaattacaaagtagtctttaagt 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aacaactaaagccaagaatagaaaaaacaaactgtaaattacaaagtagtctttaagt 678


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)